Parental gene:

RPS20, ENSAMEG00000006087

Aliases:None
Description:ribosomal protein S20 [Source:HGNC Symbol;Acc:10405]
Organism:Panda (Ailuropoda melanoleuca)
Coordinates:GL192592.1:13073..14024(-)


>ENSAMEG00000006087
GCTTTTAAAGACACCGGAAAGACACCCGTGGAACCGGAGGTGGCGATTCACCGAATTAGAATTACTCTCACCAGCCGCAA
CGTAAAGTCTTTGGAAAAGGTATGTGCTGACTTGATCAGGGGCGCAAAGGAAAAGAATCTCAAAGTGAAAGGACCCGTTC
GGATGCCTACCAAGACTCTGAGAATCACTACAAGAAAAACTCCTTGTGGTGAAGGTTCTAAGACTTGGGATCGTTTTCAG
ATGAGGATCCACAAGCGACTCATTGATTTGCACAGTCCTTCTGAGATTGTTAAGCAGATTACTTCCATCAGTATTGAGAC
AGGAGTTGAGGTTGAAGTCACCATTGCAGAT

Species Parental gene accession Homology type Retrogenes number
Cavia porcellus ENSCPOG00000011697 possible_ortholog 10 retrogenes
retro_cpor_1002, retro_cpor_1016, retro_cpor_1064, retro_cpor_1104, retro_cpor_1507, retro_cpor_404, retro_cpor_499, retro_cpor_533, retro_cpor_544, retro_cpor_717,
Loxodonta africana ENSLAFG00000002515 possible_ortholog 8 retrogenes
retro_lafr_353, retro_lafr_378, retro_lafr_537, retro_lafr_719, retro_lafr_730, retro_lafr_851, retro_lafr_865, retro_lafr_880,
Macropus eugenii ENSMEUG00000014171 ortholog_one2one 21 retrogenes
retro_meug_100, retro_meug_1015, retro_meug_1058, retro_meug_1170, retro_meug_1313, retro_meug_1614, retro_meug_1702, retro_meug_1761, retro_meug_1777, retro_meug_1831, retro_meug_1911, retro_meug_1951, retro_meug_2065, retro_meug_2110, retro_meug_2187, retro_meug_659, retro_meug_710, retro_meug_723, retro_meug_818, retro_meug_892, retro_meug_928,
Myotis lucifugus ENSMLUG00000029059 ortholog_one2one 2 retrogenes
retro_mluc_1187, retro_mluc_546,
Macaca mulatta ENSMMUG00000021314 ortholog_one2many 1 retrogene
retro_mmul_16,
Monodelphis domestica ENSMODG00000009114 ortholog_one2one 6 retrogenes
retro_mdom_1701, retro_mdom_1735, retro_mdom_1738, retro_mdom_1814, retro_mdom_1817, retro_mdom_1943,
Mustela putorius furo ENSMPUG00000010452 possible_ortholog 15 retrogenes
retro_mputfur_1094, retro_mputfur_1188, retro_mputfur_1313, retro_mputfur_1366, retro_mputfur_1374, retro_mputfur_1432, retro_mputfur_238, retro_mputfur_249, retro_mputfur_320, retro_mputfur_418, retro_mputfur_424, retro_mputfur_433, retro_mputfur_620, retro_mputfur_77, retro_mputfur_819,
Nomascus leucogenys ENSNLEG00000001214 possible_ortholog 19 retrogenes
retro_nleu_1013, retro_nleu_1343, retro_nleu_1447, retro_nleu_1566, retro_nleu_1794, retro_nleu_1798, retro_nleu_1805, retro_nleu_1818, retro_nleu_2059, retro_nleu_2159, retro_nleu_2654, retro_nleu_2659, retro_nleu_2750, retro_nleu_2786, retro_nleu_2819, retro_nleu_2843, retro_nleu_3066, retro_nleu_382, retro_nleu_41,
Pteropus vampyrus ENSPVAG00000016402 ortholog_one2one 8 retrogenes
retro_pvam_117, retro_pvam_1355, retro_pvam_1358, retro_pvam_554, retro_pvam_638, retro_pvam_660, retro_pvam_77, retro_pvam_800,
Sarcophilus harrisii ENSSHAG00000011200 ortholog_one2one 10 retrogenes
retro_shar_135, retro_shar_228, retro_shar_418, retro_shar_436, retro_shar_441, retro_shar_443, retro_shar_450, retro_shar_504, retro_shar_544, retro_shar_785,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_amel_98 78.45 99.15
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2. retro_amel_281 70.91 91.45
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3. retro_amel_299 70.30 86.32
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4. retro_amel_437 73.74 84.62
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5. retro_amel_495 71.84 87.18
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6. retro_amel_599 79.78 72.65
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7. retro_amel_709 84.87 100.00
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8. retro_amel_1067 76.12 57.26
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9. retro_amel_1142 62.28 95.73
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10. retro_amel_1146 68.10 98.29
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11. retro_amel_1245 82.91 100.00
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12. retro_amel_1405 73.11 100.00
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13. retro_amel_1409 57.50 100.00
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14. retro_amel_1442 75.00 52.99
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15. retro_amel_1579 76.27 100.00
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16. retro_amel_1619 74.03 64.10
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17. retro_amel_1825 70.94 99.15
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Download FASTA sequences of all ENSAMEG00000006087 retrocopies