Parental gene: | BGIOSGA017602 |
| Aliases: | None |
| Description: | ATP synthase subunit beta [Source:UniProtKB/TrEMBL;Acc:B8AWF8] |
| Organism: | Rice subsp. indica (Oryza sativa indica) |
| Coordinates: | 5:28794046..28797192(-) |
>BGIOSGA017602
ATGGCGACTCGCCGGGCCCTCTCCTCCCTCGTCCGCGCCGCCTCCAGGCTCCGCGGGGCCTCGCCCGCCCCGCGCCCGCG
CGGGCCGCTCCACCGACCGTCGCCATCGGGGTACCTCTTCAACCGCGCCGCCGCGTACGCCACGGCCGCCAGCGGCGAAG
GAGGCGGCGCCTCCCGCGCCCGCGACGGGGAAGGCCACGGGTGGAGGTGTGCCAGGTCATCGGCGCCGTCGTCGACGTGC
GGTTTGACGAGGGGTTGCCTCCCATCCTCACGGCGCTCGAGGTGCTCGACCACAACATCCGCCTCAGTGCTCGAGGTGGC
GCAGCACCTTGGCGAGAACATGGTGCGCACAATCGCTATGGACGGGACTGAGGGGCTTGTCCGCGGTCAGCGCGTCCTCA
ACACCGGCTCCCCAATCACTGTTCCTGTTGGCAGGGCCACGCTTGGACGTATCATGAATGTTATTGGTGAGCCAATTGAT
GAGAAGGGTGACATAACAACGAACCACTTCCTTCCCATCCATCGTGAGGCGCCTGCTTTTGTTGAGCAAGCCACAGAACA
GCAAATTCTTGTTACTGGAATTAAGGTTGTGGATCTGCTTGCGCCCTACCAACGAGGTGGAAAGATCGGTCTTTTTGGTG
GTGCAGGAGTCGGCAAAACTGTCCTTATTATGGAGTTGATCAACAATGTTGCTAAGGCCCATGGTGGTTTCTCTGTGTTT
GCTGGTGTTGGTGAACGTACCCGTGAAGGTAATGATCTTTACAGGGAAATGATTGAAAGTGGTGTCATCAAGCTAGGTGA
CAAACAGAGTGAAAGCAAGTGTGCTCTTGTCTACGGGCAAATGAATGAGCCCCCGGGTGCTCGTGCTCGTGTTGGGTTGA
CCGGTTTGACTGTTGCGGAACATTTCCGTGATGCCGAAGGACAAGATGTGCTTTTGTTCATTGACAACATTTTCCGTTTC
ACTCAGGCGAACTCTGAGGTGTCTGCTCTTCTTGGACGTATTCCATCTGCTGTGGGATATCAACCAACTCTTGCTACTGA
TCTTGGAGGACTTCAAGAGCGAATTACAACTACAAAGAAGGGTTCCATTACATCTGTCCAAGCTATTTATGTGCCTGCTG
ATGACTTGACGGATCCTGCTCCTGCTACTACTTTTGCACATCTTGATGCTACTACTGTGTTGTCACGACAGATCTCTGAG
CTTGGTATTTACCCTGCTGTCGATCCTCTGGACTCCACATCCAGAATGCTCTCCCCCCATGTGTTGGGTGAGGATCACTA
CAACACTGCTCGTGGTGTCCAAAAGGTTCTTCAGAACTACAAGAATCTTCAGGATATTATTGCAATTTTGGGTATGGACG
AGCTCAGTGAAGATGACAAGTTGACCGTCGCTCGCGCAAGGAAGATCCAGCGTTTCTTGAGCCAGCCCTTCCATGTGGCT
GAAGTTTTCACGGGTGCTCCTGGGAAGTACGTGGAACTGAAGGAGAGCGTCAACAGTTTCCAGGGTGTTTTGGATGGGAA
ATATGATGACCTTCCCGAGCAGTCATTCTACATGGTGGGAGGCATTGAGGAAGTCATTGCTAAAGCTGAGAAGATCGCCA
AGGAGTCGGCTTCATAA
ATGGCGACTCGCCGGGCCCTCTCCTCCCTCGTCCGCGCCGCCTCCAGGCTCCGCGGGGCCTCGCCCGCCCCGCGCCCGCG
CGGGCCGCTCCACCGACCGTCGCCATCGGGGTACCTCTTCAACCGCGCCGCCGCGTACGCCACGGCCGCCAGCGGCGAAG
GAGGCGGCGCCTCCCGCGCCCGCGACGGGGAAGGCCACGGGTGGAGGTGTGCCAGGTCATCGGCGCCGTCGTCGACGTGC
GGTTTGACGAGGGGTTGCCTCCCATCCTCACGGCGCTCGAGGTGCTCGACCACAACATCCGCCTCAGTGCTCGAGGTGGC
GCAGCACCTTGGCGAGAACATGGTGCGCACAATCGCTATGGACGGGACTGAGGGGCTTGTCCGCGGTCAGCGCGTCCTCA
ACACCGGCTCCCCAATCACTGTTCCTGTTGGCAGGGCCACGCTTGGACGTATCATGAATGTTATTGGTGAGCCAATTGAT
GAGAAGGGTGACATAACAACGAACCACTTCCTTCCCATCCATCGTGAGGCGCCTGCTTTTGTTGAGCAAGCCACAGAACA
GCAAATTCTTGTTACTGGAATTAAGGTTGTGGATCTGCTTGCGCCCTACCAACGAGGTGGAAAGATCGGTCTTTTTGGTG
GTGCAGGAGTCGGCAAAACTGTCCTTATTATGGAGTTGATCAACAATGTTGCTAAGGCCCATGGTGGTTTCTCTGTGTTT
GCTGGTGTTGGTGAACGTACCCGTGAAGGTAATGATCTTTACAGGGAAATGATTGAAAGTGGTGTCATCAAGCTAGGTGA
CAAACAGAGTGAAAGCAAGTGTGCTCTTGTCTACGGGCAAATGAATGAGCCCCCGGGTGCTCGTGCTCGTGTTGGGTTGA
CCGGTTTGACTGTTGCGGAACATTTCCGTGATGCCGAAGGACAAGATGTGCTTTTGTTCATTGACAACATTTTCCGTTTC
ACTCAGGCGAACTCTGAGGTGTCTGCTCTTCTTGGACGTATTCCATCTGCTGTGGGATATCAACCAACTCTTGCTACTGA
TCTTGGAGGACTTCAAGAGCGAATTACAACTACAAAGAAGGGTTCCATTACATCTGTCCAAGCTATTTATGTGCCTGCTG
ATGACTTGACGGATCCTGCTCCTGCTACTACTTTTGCACATCTTGATGCTACTACTGTGTTGTCACGACAGATCTCTGAG
CTTGGTATTTACCCTGCTGTCGATCCTCTGGACTCCACATCCAGAATGCTCTCCCCCCATGTGTTGGGTGAGGATCACTA
CAACACTGCTCGTGGTGTCCAAAAGGTTCTTCAGAACTACAAGAATCTTCAGGATATTATTGCAATTTTGGGTATGGACG
AGCTCAGTGAAGATGACAAGTTGACCGTCGCTCGCGCAAGGAAGATCCAGCGTTTCTTGAGCCAGCCCTTCCATGTGGCT
GAAGTTTTCACGGGTGCTCCTGGGAAGTACGTGGAACTGAAGGAGAGCGTCAACAGTTTCCAGGGTGTTTTGGATGGGAA
ATATGATGACCTTCCCGAGCAGTCATTCTACATGGTGGGAGGCATTGAGGAAGTCATTGCTAAAGCTGAGAAGATCGCCA
AGGAGTCGGCTTCATAA
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Amborella trichopoda | AMTR_s00006p00059970 | ortholog_one2many | 1 retrogene | |
| Arabidopsis thaliana | AT5G08670 | ortholog_many2many | 1 retrogene | |
| Brassica rapa | Bra006013 | ortholog_many2many | 2 retrogenes | |
| Chlamydomonas reinhardtii | CHLREDRAFT_78348 | ortholog_one2many | 1 retrogene | |
| Aegilops tauschii | F775_32946 | ortholog_many2many | 1 retrogene | |
| Hordeum vulgare | MLOC_70791 | ortholog_many2many | 1 retrogene | |
| Oryza glaberrima | ORGLA01G0220100 | ortholog_one2many | 1 retrogene | |
| Triticum aestivum | TRAES3BF058700080CFD_g | ortholog_one2many | 2 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_oind_87 | 73.40 | 72.68 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_oind_104 | 71.76 | 80.30 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all BGIOSGA017602 retrocopies