RetrogeneDB ID: retro_ttru_1846

Retrocopy location

• Organism: Dolphin (Tursiops truncatus)
• Coordinates: scaffold_94337:68981..69344(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: ORMDL1
• Ensembl ID: ENSTTRG00000005240
• Aliases: None
• Description: ORM1-like 1 (S. cerevisiae) [Source:HGNC Symbol;Acc:16036]

Sequence

>retro_ttru_1846
TTGGGAGTTGGTTTGCTTCGTATCGTTTTACTCAGTATTCCTGTTGCCTGGACCTTAACAAATGTTATACCTAATCTGGG
GATGTATGTATTTTTGCATGCAGTAAAAGGAACGCCGTTTGAAACTCCCGACCAGGGTAAAGCGAGGCTCCTAACACACT
GGGATCAACGGGACTACGGAGTACAGTTTACATCTTCACGGAAGTTTTTCACCGTGTCTCCAATAATTCTATATTTTCTG
GCAAGTTTCTATACGAAGTATGATCCAACTCACTTCATCTTAAACACAGCTGCTCTCCTGAGTGTGCTAGTTCCCAAAAT
GCCGCAGCTACGTGGGGTTCGGATCTTTGGAATGAATAAGTAT

Alignment

ORF - retro_ttru_1846 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 86.78 %
• Parental protein coverage: 79.08 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  LHIVLLSIPFFSVPVAWTLTNVIHNLGMYVFLHAVKGTPFETPDQGKARLLTHWEQLDYGVQFTSSRKFF
          L...LL.I...S.PVAWTLTNVI.NLGMYVFLHAVKGTPFETPDQGKARLLTHW.Q.DYGVQFTSSRKFF
Retrocopy LGVGLLRIVLLSIPVAWTLTNVIPNLGMYVFLHAVKGTPFETPDQGKARLLTHWDQRDYGVQFTSSRKFF

Parental  TISPIILYFLASFYTKYDPTHFILNTASLLSVLIPKMPQLHGVRIFGINKY
          T.SPIILYFLASFYTKYDPTHFILNTA.LLSVL.PKMPQL.GVRIFG.NKY
Retrocopy TVSPIILYFLASFYTKYDPTHFILNTAALLSVLVPKMPQLRGVRIFGMNKY

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Tursiops truncatus was not studied using RNA-Seq expression data.

ChIP-Seq

Tursiops truncatus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_ttru_1846 retrocopy.

TSS

Tursiops truncatus was not studied using FANTOM5 data.

Lab

retro_ttru_1846 was not experimentally validated.

Homology

Retrocopy orthology:

Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 12 parental genes, and 14 retrocopies.

Species	Parental gene accession	Retrocopies number
Callithrix jacchus	ENSCJAG00000005579	1 retrocopy	retro_cjac_2962,
Homo sapiens	ENSG00000128699	1 retrocopy	retro_hsap_645,
Gorilla gorilla	ENSGGOG00000015259	1 retrocopy	retro_ggor_565,
Loxodonta africana	ENSLAFG00000007769	1 retrocopy	retro_lafr_411,
Myotis lucifugus	ENSMLUG00000014339	1 retrocopy	retro_mluc_2318,
Macaca mulatta	ENSMMUG00000014316	1 retrocopy	retro_mmul_2432,
Nomascus leucogenys	ENSNLEG00000006625	1 retrocopy	retro_nleu_730,
Pongo abelii	ENSPPYG00000013017	2 retrocopies	retro_pabe_570, retro_pabe_571,
Pan troglodytes	ENSPTRG00000012736	1 retrocopy	retro_ptro_469,
Sus scrofa	ENSSSCG00000016044	1 retrocopy	retro_sscr_247,
Tupaia belangeri	ENSTBEG00000012942	1 retrocopy	retro_tbel_10,
Tursiops truncatus	ENSTTRG00000005240	2 retrocopies	retro_ttru_1846 , retro_ttru_770,