RetrogeneDB ID:

retro_ttru_1662

Retrocopy
location
Organism:Dolphin (Tursiops truncatus)
Coordinates:scaffold_84095:6098..7685(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:DDX5
Ensembl ID:ENSTTRG00000008793
Aliases:None
Description:DEAD (Asp-Glu-Ala-Asp) box helicase 5 [Source:HGNC Symbol;Acc:2746]


Retrocopy-Parental alignment summary:






>retro_ttru_1662
GGTTATTCGAGTGACCGAGACTGCACCTGGGATCGAGGGTTTCGTGTCCCTCGATTTGGAGGAAGTAGGGCAGGGCCGTT
ATCTGGAAAGAAGTTTGGAAACCCTGGGGAGAAACTGGTTAAAAAGAAGTGGAATCTTGATGAGCTGTCCAAATTTGAGA
AGAATTTTTATCAAGAACACCCTGATTTGGCTAGGTGTACAGCACAAGAGGGAGAGACATACAGAAGAAGCAAGGAAATT
ACAGTTAGAGGTCACAACTGCCCAAAGCCAGTACTGAACTTTTATGAAGCGAACTTCCCACCAAATGTCATGGACGTGAT
TGCAAGGCAGAACTTTACTGAACCCACAGCTATTCAAGCTCAGGGATGGCCAGTTGCTCTAAATAGATTGGATATGGTTG
GGGTAGCAGAAACTGGACCTGGGAAGGCGTTGTCTTATTTGATGCCTGCCATTGTCCACATCAATCATCAGCCACTCCTA
GAGAGAGGTGACGGACCTATTTGCTTGGTGCTGGCACCAACTCGGGAACTGGCCCAACAGGTACAGCAAGTAGCTGCTGA
ATACTGTAGAGCATGTTGCTTGAAGTCCACTTGCATTTATCGTGGTGCTCCCAAGGGACCACAAATATGTTATTTGGAGA
GAGATGTAGAAATCTGTATTGCAACACCTGGAAGACTTACTGACTTTTTAGAATGTGGGAAAACCAATCTAAGAAGAACC
ACCTATCTTGTCCTTGATGAAGCAGACAGAATGCTTGATATGGGATTCGAACCTCAAATAAGGAAGATTGTGGATTAGAT
AAGACCTGATAGGCAAACCCTAATGTGGAGTGCTACTTGGCCAAAAGAAGTAAGACAGCTTGCTGAAGATTTCCTGAAAG
ACTATATTCATATAAACATTGGTGCACTAGAACTGAGTGCAAATCACAACATTCTTCAGATTGTGGATGTGTGTCATGAT
GTAGAAAAGGAAGAAAAGCTTATTCATTTAATGGAAGAGGTCATGAGTGAGAAGATGATTAAAACCATTGTTTTTGTTGA
AACCAAAAGTAGATGTGATGAACTCACTAGAAAAATGAGGATAGATGGGTGGCCTGTCATGGGTATCCATGGTGACAAGA
GTCAACAGGAACGTGACTGGGTTCTAAATGAATTCAAACATGGAAAGGCTCCTATTCTGATTGCTACAGATGTGGCCTCC
AGAGGGCTAGATGTGGAAGATGTGAAATTTGTCATCAATTATGACTACCCTAACTCCTCAGAGGATTACATTCATCGAAT
TGGAAGAACTGCTTGCAGTACCAAAACAGGCACAGCATACACTTTCTTTACACCTGATAACATAAAGCAAGTGAGTGACC
TTATCTCTGTGCTTCGTGAAGCTAATCAAGCAATTAATCCCAAATTGCTTCAGTTGGTCGAAGACAGAGGTTCAGGTCGT
TCCAGGGGTAGAGGAGGCATGAAGGATGACCATCGGGACAGATACTCTGTTGGCAAAAGGGGTGGATTTAATACATTTAG
AGACAGGGAAAATTATGACAGGTTACTCTAGTCTGCTTAAGAGAGATTTTGGGGCAAAAACTCAAAA

ORF - retro_ttru_1662 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 91.12 %
Parental protein coverage: 86.16 %
Number of stop codons detected: 3
Number of frameshifts detected: 0


Retrocopy - Parental Gene Alignment:

ParentalGYSSDRDRGRDRGFGAPRFGGSRAGPLSGKKFGNPGEKLVKKKWNLDELPKFEKNFYQEHPDLARRTAQE
GYSSDRD...DRGF..PRFGGSRAGPLSGKKFGNPGEKLVKKKWNLDEL.KFEKNFYQEHPDLAR.TAQE
RetrocopyGYSSDRDCTWDRGFRVPRFGGSRAGPLSGKKFGNPGEKLVKKKWNLDELSKFEKNFYQEHPDLARCTAQE
ParentalVETYRRSKEITVRGHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGS
.ETYRRSKEITVRGHNCPKPVLNFYEANFP.NVMDVIARQNFTEPTAIQAQGWPVAL..LDMVGVA.TG.
RetrocopyGETYRRSKEITVRGHNCPKPVLNFYEANFPPNVMDVIARQNFTEPTAIQAQGWPVALNRLDMVGVAETGP
ParentalGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIR
GK.LSYL.PAIVHINHQP.LERGDGPICLVLAPTRELAQQVQQVAAEYCRAC.LKSTCIY.GAPKGPQI.
RetrocopyGKALSYLMPAIVHINHQPLLERGDGPICLVLAPTRELAQQVQQVAAEYCRACCLKSTCIYRGAPKGPQIC
ParentalDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATW
.LER.VEICIATPGRL.DFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVD.IRPDRQTLMWSATW
RetrocopyYLERDVEICIATPGRLTDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVD*IRPDRQTLMWSATW
ParentalPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLMEEIMSEKENKTIVFVETKR
PKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEK.EKLI.LMEE.MSEK..KTIVFVETK.
RetrocopyPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKEEKLIHLMEEVMSEKMIKTIVFVETKS
ParentalRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDYPNSS
RCDELTRKMR.DGWP.MGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDYPNSS
RetrocopyRCDELTRKMRIDGWPVMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDYPNSS
ParentalEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLREANQAINPKLLQLVEDRGSGRSRGRGGMKDD
EDYIHRIGRTA.STKTGTAYTFFTP.NIKQVSDLISVLREANQAINPKLLQLVEDRGSGRSRGRGGMKDD
RetrocopyEDYIHRIGRTACSTKTGTAYTFFTPDNIKQVSDLISVLREANQAINPKLLQLVEDRGSGRSRGRGGMKDD
ParentalRRDRYSAGKRGGFNTFRDRENYDRGYSSLLKRDFGAKTQ
.RDRYS.GKRGGFNTFRDRENYDR...S...R..G....
RetrocopyHRDRYSVGKRGGFNTFRDRENYDRLL*SA*ERFWGKNSK

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






RNA-Seq - click to see more details

Tursiops truncatus was not studied using RNA-Seq expression data.

ChIP-Seq - click to see more details

Tursiops truncatus was not studied using ChIP-Seq data.

EST - click to see more details

No EST(s) were mapped for retro_ttru_1662 retrocopy.

TSS - click to see more details

Tursiops truncatus was not studied using FANTOM5 data.

Lab - click to see more details

retro_ttru_1662 was not experimentally validated.

Retrocopy orthology:
Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.
Parental genes homology:
Parental genes homology involve 10 parental genes, and 16 retrocopies.

Species Parental gene accession Retrocopies number
Echinops telfairi ENSETEG000000199501 retrocopy
retro_etel_1009,
Felis catus ENSFCAG000000035121 retrocopy
retro_fcat_172,
Myotis lucifugus ENSMLUG000000094964 retrocopies
retro_mluc_1136, retro_mluc_1499, retro_mluc_1845, retro_mluc_2208,
Monodelphis domestica ENSMODG000000037434 retrocopies
retro_mdom_1519, retro_mdom_1520, retro_mdom_1955, retro_mdom_1956,
Mus musculus ENSMUSG000000207191 retrocopy
retro_mmus_788,
Pteropus vampyrus ENSPVAG000000019321 retrocopy
retro_pvam_1267,
Rattus norvegicus ENSRNOG000000306801 retrocopy
retro_rnor_1277,
Tupaia belangeri ENSTBEG000000094901 retrocopy
retro_tbel_4260,
Tarsius syrichta ENSTSYG000000121491 retrocopy
retro_tsyr_1269,
Tursiops truncatus ENSTTRG00000008793 1 retrocopy
retro_ttru_1662 ,


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