Parental gene:

DDX5, ENSFCAG00000003512

Aliases:None
Description:DEAD (Asp-Glu-Ala-Asp) box helicase 5 [Source:HGNC Symbol;Acc:2746]
Organism:Cat (Felis catus)
Coordinates:E1:48394001..48400392(-)


>ENSFCAG00000003512
GAGGAGGCGGTCCAGACTATAAAACCGGCTGCCGGGACGCGGCCGGCACCTCATTCATTTCCACCGCTCCGGCCTCAGTC
ATCGCCGCTCCTCCGCCGCTGCCGCCCCCGCAAGGCTTTGCTGTCGCCAAAGCCACCCGCAGCGACTCGTCGCACCCGAT
TCTCTCCATTTCGTTCCCCGCCAACCGCAACCATTGACGCCATGTCGGGTTATTCGAGTGACCGAGACCGCGGCCGGGAT
CGAGGGTTTGGTGCACCTCGATTTGGGGGAAGTAGGGCAGGGCCCCTATCTGGAAAGAAGTTTGGAAACCCTGGGGAAAA
ACTAGTCAAAAAGAAGTGGAATCTTGATGAGCTGCCCAAATTTGAGAAGAATTTTTATCAAGAGCACCCTGATTTGGCTA
GGCGCACAGCACAAGAGGTGGAGACATACAGAAGGAGTAAGGAAATTACGGTTAGAGGTCACAACTGCCCAAAGCCAGTT
CTGAATTTTTATGAAGCGAACTTCCCTGCTAACGTAATGGATGTCATTGCAAGACAGAATTTTACTGAGCCCACTGCTAT
TCAAGCTCAGGGATGGCCCGTTGCTCTAAGTGGATTGGATATGGTTGGAGTAGCACAGACTGGATCCGGGAAAACGTTGT
CTTATTTGCTGCCTGCTATCGTCCACATCAATCATCAGCCATTCCTAGAGAGAGGTGATGGGCCTATTTGCTTGGTGCTG
GCACCAACTCGGGAACTGGCCCAACAAGTACAGCAAGTAGCTGCTGAATACTGTAGAGCATGTCGCTTGAAGTCCACTTG
CATCTATGGTGGTGCTCCAAAGGGACCACAAATTCGTGATTTGGAGAGAGGTGTGGAAATCTGTATTGCAACACCTGGAA
GACTGATTGACTTTTTGGAGTGTGGGAAAACCAATCTGAGAAGAACCACCTACCTTGTCCTTGATGAAGCAGACAGAATG
CTTGATATGGGCTTTGAACCCCAAATAAGGAAGATTGTGGATCAGATAAGACCTGATAGGCAAACCCTAATGTGGAGTGC
AACTTGGCCAAAAGAAGTAAGACAGCTTGCTGAAGATTTCCTGAAAGACTACATTCACATAAACATTGGTGCACTAGAAC
TGAGTGCAAACCACAATATTCTTCAGATTGTGGATGTATGTCATGATGTAGAAAAGGATGAAAAACTTATTCGTCTAATG
GAAGAGATCATGAGTGAGAAGGAGAATAAAACCATTGTTTTTGTCGAAACCAAAAGAAGATGTGATGAGCTTACTAGAAA
AATGAGGAGAGACGGGTGGCCCGCCATGGGTATCCATGGTGACAAGAGTCAACAGGAACGTGACTGGGTTCTAAATGAAT
TCAAACATGGAAAAGCTCCTATTCTGATTGCTACAGATGTGGCCTCCAGAGGGCTAGATGTGGAAGATGTGAAATTTGTC
ATCAATTATGACTACCCTAACTCCTCAGAGGATTATATTCATCGAATTGGAAGAACTGCTCGCAGTACCAAAACAGGCAC
AGCATACACTTTCTTTACACCTAATAACATAAAGCAAGTGAGCGACCTTATCTCTGTGCTTCGTGAAGCTAATCAAGCAA
TTAATCCCAAGTTGCTTCAGTTGGTCGAAGACAGAGGTTCAGGTCGTTCCAGGGGTAGAGGAGGCATGAAGGATGACCGT
CGGGACAGATACTCTGCGGGCAAAAGGGGTGGATTTAATACCTTTAGAGACAGGGAAAATTATGACCGAGGTTATTCTAG
TCTGCTTAAGAGAGATTTTGGGGCAAAAACTCAGAATGGTGTTTACAGTGCTGCAAATTACACCAATGGGAGCTTTGGAA
GTAATTTTGTGTCTGCTGGTATACAGACCAGTTTTAGGACTGGTAATCCAACAGGGACTTACCAGAACGGTTATGATAGC
ACTCAGCAATATGGAAGTAACGTTCCAAATATGCACAATGGTATGAACCAACAGGCATATGCATATCCTGCTACTGCAGC
TGCACCTATGATTGGTTATCCAATGCCAACAGGATATTCTCAATAA

Library Parental gene expression (RPM)
SRP017611_brain 503 .05 RPM
SRP017611_kidney 488 .91 RPM
SRP017611_liver 371 .10 RPM



Species Parental gene accession Homology type Retrogenes number
Echinops telfairi ENSETEG00000019950 ortholog_one2one 1 retrogene
retro_etel_1009,
Felis catus ENSFCAG00000031631 other_paralog 1 retrogene
retro_fcat_583,
Myotis lucifugus ENSMLUG00000009496 ortholog_one2one 4 retrogenes
retro_mluc_1136, retro_mluc_1499, retro_mluc_1845, retro_mluc_2208,
Monodelphis domestica ENSMODG00000003743 ortholog_one2one 4 retrogenes
retro_mdom_1519, retro_mdom_1520, retro_mdom_1955, retro_mdom_1956,
Mus musculus ENSMUSG00000020719 ortholog_one2one 1 retrogene
retro_mmus_788,
Pteropus vampyrus ENSPVAG00000001932 ortholog_one2one 1 retrogene
retro_pvam_1267,
Rattus norvegicus ENSRNOG00000030680 ortholog_one2one 1 retrogene
retro_rnor_1277,
Tupaia belangeri ENSTBEG00000009490 ortholog_one2one 1 retrogene
retro_tbel_4260,
Tarsius syrichta ENSTSYG00000012149 ortholog_one2one 1 retrogene
retro_tsyr_1269,
Tursiops truncatus ENSTTRG00000008793 ortholog_one2one 1 retrogene
retro_ttru_1662,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_fcat_172 68.60 59.91
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Download FASTA sequences of all ENSFCAG00000003512 retrocopies