RetrogeneDB ID:

retro_tsyr_29

Retrocopy
location
Organism:Tarsier (Tarsius syrichta)
Coordinates:scaffold_32404:2810..4466(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:ENSTSYG00000007504
Aliases:None
Status:KNOWN_PROTEIN_CODING
Parental gene
information
Parental gene summary:
Parental gene symbol:GK
Ensembl ID:ENSTSYG00000008249
Aliases:None
Description:glycerol kinase [Source:HGNC Symbol;Acc:4289]


Retrocopy-Parental alignment summary:






>retro_tsyr_29
ATGGCAGCCCCAAAGAAACCAGTGGTGGGGCCGTTGGTGGGGTCGGTGGTCCAGGGCTCCAGCTCCACTCGCTTTCTGGT
TTTCAATTCAAAAACCTCGGAGCTCCTGAGCCATCACCAGGTGGAGCTGACGCAAGAGTTCCCCCGGGAAGGGTGGGTGG
AGCAAGACCCGAAGGAGATCCTGCAGTCTGTCTACGAATGCATGGCCAGGACGTGCGAGAAGCTCCGCGACCTGAACGTC
GACACGTCCAGCATCAAGGCCGTGGGCGTCAGCAACCAGCGAGAGACCACCGTCATCTGGGACAGGCTGACAGGGGAGCC
CCTGTACAATGCCGTGGTGTGGCTGGACCTGAGGACCCAGGCCACCGTGGAGGCCCTGAGCAAGAAGATCCCAGGGAACA
ACAACTTCGTCAAGTCCAAGACAGGCCTCCCGCTCAGCACCTACTTCAGCGCAGTGAAGCTGCGCTGGATGCTGGACAAT
GTGGTACACGTGCAGAAGGCGGTTGAGGAGGGTCGGGCCCTCTTCGGCACTGTGGACTCCTGGCTGATCTGGAGCATGAC
AGGGGGCGTCAACGGGGGCGTGCACTGCACTGATGTCACCAACGCCAGCAGGACCATGCTCTTCAACATCCACTCCCTGG
AATGGGATCAGGAGCTCTGCGACTTTTTTGAAGTTCCCATGACCATTCTCCCCAATGTCTGGAGTTCTTCGGAGATCTAC
GGCCTCATAAGAGGCGGGGTCCTGGAAGGGGTACCCATATCTGGTTGTTTGGGGGACCAGTCGGCTGCATTGGTAGGACA
GATGTGCTTACAGGAGGGACAGGCCAAAAATACATATGGAACCGGCTGCTTCCTGCTGTGCAACACAGGTCGCAAGCGCG
TGTTCTCTGAGCATGGCCTTCTGACGACAGTGGCCTACAAGCTGGGCAAGGACAAGCCCGTGTGTTACGCGCTGGAAGGC
TCTGTTGCTATCGCGGGCGCTGTGGTTCGCTGGCTGAAGGACAACCTTGGAATCATAGAGACCGCAGAAGAGATTGAAAA
ACTTGCTAAGCAGGCAGGCACTTCCTACGGCTGCTACTTTGTCCCAGCGTTTTCTGGATTGTATGCACCTTATTGGGAGC
CCAGTGCGAGAGGGATCATCTGTGGTCTGACTCAGTTTACCAACAAATGTCATATTGCTTTTGCTGCATTAGAAGCTGTT
TGTTTCCAGACCCGAGAGATTGTGGAAGCTATGAACCGTGACTGTGGAACTCCACTAAGCCATCTGCAGGTGGACGGTGG
AATGACCAACAACAGAATCCTGATGCAACTACAGGCGGATATTCTGCATGTCCCAGTTGTAAAGCCCTGCATGCCTGAGA
CCACCGCACTGGGTGCCGCCATGGCCGCAGGTGCTGCCGAAGGGGTCGGCGTCTGGAGTCTGGAGCCCGAGAGTCTGTCG
GGTGCCAGAGTGGAACGATTTGAACCGCAGATCCAGGCCTCAGAAAGTGAAAATCGTTATGCTACGTGGAAGAAAGCTGT
GAGGAAGTCAATGGGTTGGGTGACAACTCCTGTAAGTGGGGACTCGACTATCTTCTCTAGTCTGCCTTTGGGGTTTTTTA
TAGTGAGTAGCATGGTCATGCTAATTGGAGCAAGATATATCTCAGATATATCAGAG

ORF - retro_tsyr_29 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 86.41 %
Parental protein coverage: 55.48 %
Number of stop codons detected: 0
Number of frameshifts detected: 0


Retrocopy - Parental Gene Alignment:

ParentalKAGALEGVPISGCLGDQSAALVGQMCFQDGQAKNTYGTGCFLLCNTGHKCVFSDHGLLTTVAYKLGRDKP
..G.LEGVPISGCLGDQSAALVGQMC.Q.GQAKNTYGTGCFLLCNTG.K.VFS.HGLLTTVAYKLG.DKP
RetrocopyRGGVLEGVPISGCLGDQSAALVGQMCLQEGQAKNTYGTGCFLLCNTGRKRVFSEHGLLTTVAYKLGKDKP
ParentalVYYALEGSVAIAGAVIRWLRDNLGIIQSSEEIEKLAKEVGTSYGCYFVPAFSGLYAPYWEPSARGIICGL
V.YALEGSVAIAGAV.RWL.DNLGII...EEIEKLAK..GTSYGCYFVPAFSGLYAPYWEPSARGIICGL
RetrocopyVCYALEGSVAIAGAVVRWLKDNLGIIETAEEIEKLAKQAGTSYGCYFVPAFSGLYAPYWEPSARGIICGL
ParentalTQFTNKCHIAFAALEAVCFQTREILDAMNRDCGIPLSHLQVDGGMTSNKILMQLQADILYIPVVKPSMPE
TQFTNKCHIAFAALEAVCFQTREI..AMNRDCG.PLSHLQVDGGMT.N.ILMQLQADIL..PVVKP.MPE
RetrocopyTQFTNKCHIAFAALEAVCFQTREIVEAMNRDCGTPLSHLQVDGGMTNNRILMQLQADILHVPVVKPCMPE
ParentalTTALGAAMAAGAAEGVGVWSLEPEDLSAVTMERFEPQINAEESEIRYSTWKKAVMKSMGWVTTQSPESGD
TTALGAAMAAGAAEGVGVWSLEPE.LS....ERFEPQI.A.ESE.RY.TWKKAV.KSMGWVTT..P.SGD
RetrocopyTTALGAAMAAGAAEGVGVWSLEPESLSGARVERFEPQIQASESENRYATWKKAVRKSMGWVTT--PVSGD
ParentalPSIFCSLPLGFFIVSSMVMLIGARYISGI
..IF.SLPLGFFIVSSMVMLIGARYIS.I
RetrocopySTIFSSLPLGFFIVSSMVMLIGARYISDI

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






RNA-Seq - click to see more details

Tarsius syrichta was not studied using RNA-Seq expression data.

ChIP-Seq - click to see more details

Tarsius syrichta was not studied using ChIP-Seq data.

EST - click to see more details

Tarsius syrichta was not studied using EST data.

TSS - click to see more details

Tarsius syrichta was not studied using FANTOM5 data.

Lab - click to see more details

retro_tsyr_29 was not experimentally validated.

Retrocopy orthology:
Tarsius syrichta does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.
Parental genes homology:
Parental genes homology involve 14 parental genes, and 25 retrocopies.

Species Parental gene accession Retrocopies number
Callithrix jacchus ENSCJAG000000076333 retrocopies
retro_cjac_125, retro_cjac_3161, retro_cjac_4035,
Cavia porcellus ENSCPOG000000032612 retrocopies
retro_cpor_11, retro_cpor_20,
Echinops telfairi ENSETEG000000082792 retrocopies
retro_etel_2000, retro_etel_247,
Felis catus ENSFCAG000000042641 retrocopy
retro_fcat_140,
Homo sapiens ENSG000001988144 retrocopies
retro_hsap_3087, retro_hsap_3120, retro_hsap_4885, retro_hsap_70,
Loxodonta africana ENSLAFG000000076321 retrocopy
retro_lafr_30,
Monodelphis domestica ENSMODG000000024171 retrocopy
retro_mdom_234,
Mus musculus ENSMUSG000000250592 retrocopies
retro_mmus_119, retro_mmus_97,
Nomascus leucogenys ENSNLEG000000101022 retrocopies
retro_nleu_1650, retro_nleu_771,
Oryctolagus cuniculus ENSOCUG000000130232 retrocopies
retro_ocun_2, retro_ocun_81,
Rattus norvegicus ENSRNOG000000341162 retrocopies
retro_rnor_114, retro_rnor_34,
Sarcophilus harrisii ENSSHAG000000064701 retrocopy
retro_shar_35,
Ictidomys tridecemlineatus ENSSTOG000000087321 retrocopy
retro_itri_1436,
Tarsius syrichta ENSTSYG00000008249 1 retrocopy
retro_tsyr_29 ,


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