RetrogeneDB ID: retro_tsyr_1758

Retrocopy location

• Organism: Tarsier (Tarsius syrichta)
• Coordinates: scaffold_571848:312..664(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: C16orf87
• Ensembl ID: ENSTSYG00000008921
• Aliases: None
• Description: chromosome 16 open reading frame 87 [Source:HGNC Symbol;Acc:33754]

Sequence

>retro_tsyr_1758
AGCAGAAAACTTTTAAATGCAAAACACTCAAGAGAAATCACCACCTTCTACAGAAAACAAGAATGAGGCCAGGAGGAGGC
AAACAGAGAGAGTTAGGAGAGGGAAGATAAATGCTATAGTAAATAAAGATTTAGAAAACAGGAAAAGGTATTGAAGTAAC
AGTCATTCAGCTCATATCAGATGAGGAAGAGGAAGACCTAAAGGTGCATCTGCCAAAAAACATGAGGAAGAAAGAGAGAA
ACAGGAAAAGGAAACTGATATCCAGGCTAACTTCACTGATGAAAAGGCTTTTGTGTTTTCAGTTGCCTTGGCAGAAATAA
ATAGAAAAATTATCAATCAAAGACTTATTCTC

Alignment

ORF - retro_tsyr_1758 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 85.59 %
• Parental protein coverage: 88.64 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  SRKLLNAKHS-EKSPPATENKHEAKRRRTERVRREKINSTVNKDLENRKRSRSNSHSDHIRRGRGRPKSA
          SRKLLNAKHS.EKSPP.TENK.EA.RR.TERVRR.KIN..VNKDLENRKR..SNSHS.HIR.GRGRPK.A
Retrocopy SRKLLNAKHS>EKSPPSTENKNEARRRQTERVRRGKINAIVNKDLENRKRY*SNSHSAHIR*GRGRPKGA

Parental  SAKKHEEEREKQEKEIDIYANLSDEKAFVFSVALAEINRKIINQRLIL
          SAKKHEEEREKQEKE.DI.AN..DEKAFVFSVALAEINRKIINQRLIL
Retrocopy SAKKHEEEREKQEKETDIQANFTDEKAFVFSVALAEINRKIINQRLIL

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Tarsius syrichta was not studied using RNA-Seq expression data.

ChIP-Seq

Tarsius syrichta was not studied using ChIP-Seq data.

EST

Tarsius syrichta was not studied using EST data.

TSS

Tarsius syrichta was not studied using FANTOM5 data.

Lab

retro_tsyr_1758 was not experimentally validated.

Homology

Retrocopy orthology:

Tarsius syrichta does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 5 parental genes, and 8 retrocopies.

Species	Parental gene accession	Retrocopies number
Canis familiaris	ENSCAFG00000003679	1 retrocopy	retro_cfam_1054,
Cavia porcellus	ENSCPOG00000010228	2 retrocopies	retro_cpor_1197, retro_cpor_1228,
Dasypus novemcinctus	ENSDNOG00000006412	2 retrocopies	retro_dnov_1512, retro_dnov_2463,
Tupaia belangeri	ENSTBEG00000013316	2 retrocopies	retro_tbel_3011, retro_tbel_305,
Tarsius syrichta	ENSTSYG00000008921	1 retrocopy	retro_tsyr_1758 ,