RetrogeneDB ID: retro_tbel_3011

Retrocopy location

• Organism: Treeshrew (Tupaia belangeri)
• Coordinates: scaffold_126381:498..749(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSTBEG00000013316
• Aliases: None
• Description: None

Sequence

>retro_tbel_3011
CTGTCTGTAATTCGAGCCAAGAAAGTGAAGATGGCCACCAAATTGGGCCCTGGATGCAACCAACAGGTTCCTATTGCATG
TAAGTCATGTCCCTGTGGTTACATATTTATTAGCAGAAGACTTTTAAATGCAAAATACTCAGAGAGATCACCACCTTCTA
CAGAAAACAAGTGTGAAGCCAAGAGGAGGTGAACCGAGAGAGGAGAGAGAAGATAAATTCTACTGTAAACAAAGATTTAG
AAAACAGAAAG

Alignment

ORF - retro_tbel_3011 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 82.56 %
• Parental protein coverage: 55.19 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  MSVTRAKKVKMATKSCPECDQQVPVACKSCPCGYIFISRKLLNAKYSEKSPPSTENKHEAKRRR-TERVR
          .SV.RAKKVKMATK..P.C.QQVP.ACKSCPCGYIFISR.LLNAKYSE.SPPSTENK.EAK.RR...R.R
Retrocopy LSVIRAKKVKMATKLGPGCNQQVPIACKSCPCGYIFISRRLLNAKYSERSPPSTENKCEAK-RR<VNRER

Parental  REKINSTVNKDLENRK
          REKINSTVNKDLENRK
Retrocopy REKINSTVNKDLENRK

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Tupaia belangeri was not studied using RNA-Seq expression data.

ChIP-Seq

Tupaia belangeri was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_tbel_3011 retrocopy.

TSS

Tupaia belangeri was not studied using FANTOM5 data.

Lab

retro_tbel_3011 was not experimentally validated.

Homology

Retrocopy orthology:

Tupaia belangeri does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 5 parental genes, and 8 retrocopies.

Species	Parental gene accession	Retrocopies number
Canis familiaris	ENSCAFG00000003679	1 retrocopy	retro_cfam_1054,
Cavia porcellus	ENSCPOG00000010228	2 retrocopies	retro_cpor_1197, retro_cpor_1228,
Dasypus novemcinctus	ENSDNOG00000006412	2 retrocopies	retro_dnov_1512, retro_dnov_2463,
Tupaia belangeri	ENSTBEG00000013316	2 retrocopies	retro_tbel_3011 , retro_tbel_305,
Tarsius syrichta	ENSTSYG00000008921	1 retrocopy	retro_tsyr_1758,