RetrogeneDB ID: retro_ogar_786

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873527.1:12960981..12961452(-)
• Located in intron of: ENSOGAG00000008987

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSOGAG00000010506
• Aliases: None
• Description: None

Sequence

>retro_ogar_786
GACACCAGGGGAGCCAAGTGCACCTTCCAGCTTCTGGAGCCAGAGGAGGCCCAGCATGTCCAGCCCCCAGCTGCCAACCC
CCTGCCTGTTGTGACCATGCTATTCTGCCTGCTAAAAGACCAGGCCAAGCAATGAACACAAGGAGCTACAGGAGAAGAGG
AGGTGTGAGGCTATCGCTGCAGCCTTCTGTCCTGCGTGACAGAAGCTTTGGTGGATCACCTCAATGTGGGAATGGCCCAG
GCCTACATGAACTAGAGAAAGGTAGGCCATGAGGTGAAGACCCTACAAGTTCAGGCTGCCCAGTTTGCCAAGTAGAAAGG
CCAGTGGATTAGGATGGTGGAGAACTTCAACCAGGCACTCAGGGAGATCGGCGATGTGGAGAACTGGGCTCGGAGCATGG
AGCTGGACATATGCACCATTGCCACCACACTGGAATACATCTACAAAGGGCAGCCGCAATCTGCCTTCTCC

Alignment

ORF - retro_ogar_786 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 66.88 %
• Parental protein coverage: 98.12 %
• Number of stop codons detected: 4
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  DATGAKSAFQLLKPEGARRGQPPAANSLPVVTMLSRLLKEHQAKQNERKELQEKRRREAIAAATCLTEAL
          D..GAK..FQLL.PE.A...QPPAAN.LPVVTML..LLK.............E...........C.TEAL
Retrocopy DTRGAKCTFQLLEPEEAQHVQPPAANPLPVVTMLFCLLKDQAKQ*TQGATGEEEV*GYRCSLLSCVTEAL

Parental  VDHLNVGVAQAYMNQRKLDHEVKTLQVQAAQFAKQTGQWIGMVENFNQALKEIGDVENWARSIELDMRTI
          VDHLNVG.AQAYMN.RK..HEVKTLQVQAAQFAK..GQWI.MVENFNQAL.EIGDVENWARS.ELD..TI
Retrocopy VDHLNVGMAQAYMN*RKVGHEVKTLQVQAAQFAK*KGQWIRMVENFNQALREIGDVENWARSMELDICTI

Parental  ATALEYVYKGQLQSASS
          AT.LEY.YKGQ.QSA.S
Retrocopy ATTLEYIYKGQPQSAFS

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_786 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 5 parental genes, and 7 retrocopies.

Species	Parental gene accession	Retrocopies number
Canis familiaris	ENSCAFG00000000061	1 retrocopy	retro_cfam_1156,
Callithrix jacchus	ENSCJAG00000008026	1 retrocopy	retro_cjac_148,
Macropus eugenii	ENSMEUG00000001570	3 retrocopies	retro_meug_12, retro_meug_1307, retro_meug_242,
Mus musculus	ENSMUSG00000090247	1 retrocopy	retro_mmus_1761,
Otolemur garnettii	ENSOGAG00000010506	1 retrocopy	retro_ogar_786 ,