RetrogeneDB ID: retro_ogar_640

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873524.1:37058257..37058521(-)
• Located in intron of: ENSOGAG00000013881

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSOGAG00000007185
• Aliases: None
• Description: None

Sequence

>retro_ogar_640
CAGCGCAAGTGCCAGGGTCACAAACCCACAAAGAGTAAGAGTGCAGCAGCGACCTGTGACTGGAACCGGGGCCCAGGAAA
AGCGATTGTGTTATGGCTCCTAAGAAGGCGTGCATTTGTGCAGCAGCAAAAGCTCAAGAAGACCCTGGAGGTCAGGATCC
GGAAGAAGATTGAACTTGATCCGGCTGATGAAAGCCAGCAGCCTAAGAAGCTGACCTTGTTGAAGGCCCCAGCCAAGAAG
AAGGGGGCAGATGCTTCCTCCACT

Alignment

ORF - retro_ogar_640 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 69.57 %
• Parental protein coverage: 88.24 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  QRKFQARKPAKSKNAAAASDRNRGP-RKGGRVIAPKKARI-VQQQKLKKNLEVGIRKKIEHDVVMKASSS
          QRK.Q..KP.KSK.AAA..D.NRGP.RK...V.APKKA.I.VQQQKLKK.LEV.IRKKIE.D......S.
Retrocopy QRKCQGHKPTKSKSAAATCDWNRGP<RKSDCVMAPKKACI>VQQQKLKKTLEVRIRKKIELDPADE--SQ

Parental  LPKKLTLLKAPAKKKGAAASSS
          .PKKLTLLKAPAKKKGA.ASS.
Retrocopy QPKKLTLLKAPAKKKGADASST

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_640 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 11 parental genes, and 14 retrocopies.

Species	Parental gene accession	Retrocopies number
Bos taurus	ENSBTAG00000002525	1 retrocopy	retro_btau_35,
Callithrix jacchus	ENSCJAG00000004427	3 retrocopies	retro_cjac_1003, retro_cjac_2634, retro_cjac_291,
Homo sapiens	ENSG00000104979	1 retrocopy	retro_hsap_628,
Gorilla gorilla	ENSGGOG00000027024	1 retrocopy	retro_ggor_550,
Monodelphis domestica	ENSMODG00000011876	2 retrocopies	retro_mdom_1436, retro_mdom_926,
Nomascus leucogenys	ENSNLEG00000013141	1 retrocopy	retro_nleu_452,
Otolemur garnettii	ENSOGAG00000007185	1 retrocopy	retro_ogar_640 ,
Procavia capensis	ENSPCAG00000014250	1 retrocopy	retro_pcap_26,
Pan troglodytes	ENSPTRG00000010565	1 retrocopy	retro_ptro_457,
Pteropus vampyrus	ENSPVAG00000006321	1 retrocopy	retro_pvam_1140,
Tursiops truncatus	ENSTTRG00000010354	1 retrocopy	retro_ttru_317,