RetrogeneDB ID: retro_ogar_606

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873524.1:41660455..41661527(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSOGAG00000031377
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSOGAG00000007457
• Aliases: None
• Description: None

Sequence

>retro_ogar_606
ATGGCCGCATCCCCGCACGCTCTCTCCTCACGCCTCCTGACAGGCTGGGCGGGAGGATGTGTCTGGTATCTTGAAAGAAG
AACCATCCAGGAATCCCCTCACAAGTTCATGCATCTTTTTAGGAATGCCAATAAGCGGTGGATTACATTTCAGCACTTTA
ATTTTCTCAAACGCATGTATGTCACACAACTGAACAGAAGCCTCAACCAGCAAGTTAAACCAAAGCCAGAACCACTGGCA
TCTCTTTTCCTTGAAAAGACATCTTCAGGTCAAGCTAAGCCTGAAATACATGAGATGAGACCTCTTTCATCCCTCAATGT
ATCTTTGTCCAGAAAGCCACATGAAAGGGAACTAATGGAAGTAGAGTCAGCCTCAATCGTTGAAGGCTCAGCAAATATGG
GGAAAGAGACCACAGATGACAAGCAGTGGAAAGAGATGAAGCTGTGTGTGGATGATCTTCCAGGAATTCTGGCTCGACTG
TCCAAAATCAAGCTCACAGCTCTAGTTGTGAGCACCACCTCAGCTGGATTTGCATTGGCCCCAGGCCCTTTTGACTGGCC
CTGTTTCCTGCTTACTTCTGTCGGGACGGGCCTCGCATCCTGTGCTGCCAACTCCGTCGATCAGTTTTTTGACGTGCCAT
TTGACTCAAACATGAATAGGACAAAGAACAGAGCTCTGGTTCGTGGACAGATCAGCCCACTGCTAGCTGTGTCCTTTGCC
ACTTGTTGTGCTGTTCCAGGAGTCGCCCTTCTGACCTGGGGGGTGAATCCACTCACAGGAGCATTGGGGGGTCTTCAACG
TTTTCCTTTACACCTGCTGTTACGCACCACTGAAGAGGATCAGCATTGCCAACACGTGGGTCGGGGCCGTGGTTGGGGCC
ATCCCACCGGTCATGGGTTGGACAGCAGCCACTGGCAGCCTGGATGCTGGAGCCTTTCTTCTGGGAGGAATCCTCTACTC
CTGGCAGTTTCCGCATTTCAACGCCCTGAGCTGGGGCCTGCGCGAGGACTACTCCCGGGGCGGCTACTGCATGATGTCGG
TCACCCACCCGGCACTGTGCCGGCGCGTGGCC

Alignment

ORF - retro_ogar_606 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 95.25 %
• Parental protein coverage: 80.95 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  MAASPHALSSRLLTGWAGGCVWYFERRTIQESPHKFMHLFRNANKRWITFQHFNFLKRMYVTQLNRSLNQ
          MAASPHALSSRLLTGWAGGCVWY.ERRTIQESPHKFMHLFRNANKRWITFQHFNFLKRMYVTQLNRSLNQ
Retrocopy MAASPHALSSRLLTGWAGGCVWYLERRTIQESPHKFMHLFRNANKRWITFQHFNFLKRMYVTQLNRSLNQ

Parental  QVKPKPEPLASPFLEKTSSGRAKPEIREMRPLSSPSVSLSRKPHERELMELESASIIEGSANVGKETKDD
          QVKPKPEPLAS.FLEKTSSG.AKPEI.EMRPLSS..VSLSRKPHERELME.ESASI.EGSAN.GKET.DD
Retrocopy QVKPKPEPLASLFLEKTSSGQAKPEIHEMRPLSSLNVSLSRKPHERELMEVESASIVEGSANMGKETTDD

Parental  KQWKEMKLCVDDLPGILARLSKIKLTALVVSTTSAGFALAPGPFDWPCFLLTSVGTGLASCAANSINQFF
          KQWKEMKLCVDDLPGILARLSKIKLTALVVSTTSAGFALAPGPFDWPCFLLTSVGTGLASCAANS..QFF
Retrocopy KQWKEMKLCVDDLPGILARLSKIKLTALVVSTTSAGFALAPGPFDWPCFLLTSVGTGLASCAANSVDQFF

Parental  EVPFDSNMNRTKNRPLVRGQISPLLAVSFATCCAVPGVALLTWGVNPLTGAL-GVFNIFLYTCCYTPLKR
          .VPFDSNMNRTKNR.LVRGQISPLLAVSFATCCAVPGVALLTWGVNPLTGAL.GVFN.FLYTCCY.PLKR
Retrocopy DVPFDSNMNRTKNRALVRGQISPLLAVSFATCCAVPGVALLTWGVNPLTGAL>GVFNVFLYTCCYAPLKR

Parental  ISIANTWVGAVVGAIPPVMGWTAATGSLDAGAFLLGGILYSWQFPHFNALSWGLREDYSRGGYCMMSVTH
          ISIANTWVGAVVGAIPPVMGWTAATGSLDAGAFLLGGILYSWQFPHFNALSWGLREDYSRGGYCMMSVTH
Retrocopy ISIANTWVGAVVGAIPPVMGWTAATGSLDAGAFLLGGILYSWQFPHFNALSWGLREDYSRGGYCMMSVTH

Parental  PALCRRVA
          PALCRRVA
Retrocopy PALCRRVA

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_606 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 5 parental genes, and 5 retrocopies.

Species	Parental gene accession	Retrocopies number
Bos taurus	ENSBTAG00000015294	1 retrocopy	retro_btau_1425,
Canis familiaris	ENSCAFG00000017899	1 retrocopy	retro_cfam_1380,
Callithrix jacchus	ENSCJAG00000004522	1 retrocopy	retro_cjac_3938,
Felis catus	ENSFCAG00000010334	1 retrocopy	retro_fcat_814,
Otolemur garnettii	ENSOGAG00000007457	1 retrocopy	retro_ogar_606 ,