RetrogeneDB ID: retro_ogar_588

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873524.1:5762574..5763126(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: METTL9
• Ensembl ID: ENSOGAG00000008169
• Aliases: None
• Description: methyltransferase like 9 [Source:HGNC Symbol;Acc:24586]

Sequence

>retro_ogar_588
ATGACGAGCGGCCCCGGCGGGCCGGTGGCGGCCGCGGGCGGCAGGAAGGAGAACCACCAGTGGTATGTGTGCAACAGAGA
GAAATTGTGCGAATCACTACAGGCTGTCTTTGTTCAGAGTTACCTTGATCAAGGAACACAGATCTTCTTAAACAACAGCA
TTGAGAAATCGGGCTGGCTATTTATCCAATTATATCATTCTTTTGTGTCATCTGTTTTTAGCCTGTTTATGTCTAGAACA
TCTATCAATGGGTTGTTAGGAAGAGGCTCAATGTTTGTGTTTTCACCAGATCAATTTCAGAGACTGCTTAAAATTAATCC
GGACTGGAAAACCCATAGACTTCTTGATTTAGGTGCTGGAGATGGAGAAGTCACAAAAATCATGAGCCCTCATTTTGAAG
AAATCTACGCCACTGAGCTTTCTGAAACCATGATATGGCAGCTTCAGAAAAAGAAATACAGAGTACTCGGTATAAATGAA
TGGCAGAATACAGGGTTCCAATATGATGTCATCAGCTGCTTGAATCTGTTGGACCGCTGTGATCAGCCCCTG

Alignment

ORF - retro_ogar_588 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 100.0 %
• Parental protein coverage: 65.02 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MTSGPGGPVAAAGGRKENHQWYVCNREKLCESLQAVFVQSYLDQGTQIFLNNSIEKSGWLFIQLYHSFVS
          MTSGPGGPVAAAGGRKENHQWYVCNREKLCESLQAVFVQSYLDQGTQIFLNNSIEKSGWLFIQLYHSFVS
Retrocopy MTSGPGGPVAAAGGRKENHQWYVCNREKLCESLQAVFVQSYLDQGTQIFLNNSIEKSGWLFIQLYHSFVS

Parental  SVFSLFMSRTSINGLLGRGSMFVFSPDQFQRLLKINPDWKTHRLLDLGAGDGEVTKIMSPHFEEIYATEL
          SVFSLFMSRTSINGLLGRGSMFVFSPDQFQRLLKINPDWKTHRLLDLGAGDGEVTKIMSPHFEEIYATEL
Retrocopy SVFSLFMSRTSINGLLGRGSMFVFSPDQFQRLLKINPDWKTHRLLDLGAGDGEVTKIMSPHFEEIYATEL

Parental  SETMIWQLQKKKYRVLGINEWQNTGFQYDVISCLNLLDRCDQPL
          SETMIWQLQKKKYRVLGINEWQNTGFQYDVISCLNLLDRCDQPL
Retrocopy SETMIWQLQKKKYRVLGINEWQNTGFQYDVISCLNLLDRCDQPL

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_588 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 5 parental genes, and 8 retrocopies.

Species	Parental gene accession	Retrocopies number
Callithrix jacchus	ENSCJAG00000020564	1 retrocopy	retro_cjac_4083,
Mustela putorius furo	ENSMPUG00000016801	2 retrocopies	retro_mputfur_1323, retro_mputfur_1610,
Oryctolagus cuniculus	ENSOCUG00000004285	1 retrocopy	retro_ocun_754,
Otolemur garnettii	ENSOGAG00000008169	3 retrocopies	retro_ogar_1745, retro_ogar_307, retro_ogar_588 ,
Rattus norvegicus	ENSRNOG00000025940	1 retrocopy	retro_rnor_2623,