RetrogeneDB ID: retro_mputfur_1323

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL897081.1:2020924..2021374(+)
• Located in intron of: ENSMPUG00000001414

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: METTL9
• Ensembl ID: ENSMPUG00000016801
• Aliases: None
• Description: methyltransferase like 9 [Source:HGNC Symbol;Acc:24586]

Sequence

>retro_mputfur_1323
TTAGGTGCTGGAGATGAAGTCAGAAAAATCATGAACCCTCATTTTGAAGAAATATATGCTACTGAGTTCTCTGAAACTAT
GATATGGCAGCTTCAGAAAAAGAAATACAGAGTTCTTGGTATAAATGAATAGCAGAATACAGGGTTCCACTATGATATAA
GTTGCTTAAATGTGCTGGATCAGCCCCTGACTGTGTTGAAAGATACCAGAAATGTCTTGGAAGCAATGAGAGACAGGGTC
ATCCTTGTTCGGGTTTTACCCTTTCATCCCTATGTGGAAAACATAGGTGGCAAGTGGGAGGGACCTTCAGAAATTTTAGA
AACCAAGAGATAGAATTGGGATGAACAAGTCAGTAGCTTGCTTGAAGTTTTCAGAAAAGCTGGTTTTGTTACCAGAGCTT
TCACCAGACTGCCATACCTGTGTGAAGACGACATGTGTAATGACTACTAC

Alignment

ORF - retro_mputfur_1323 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 79.35 %
• Parental protein coverage: 92.77 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MGAGDGEVTKIMSPHFEEIYATELSETMIWQLQKKKYRVLGINEWQNTGFQYDVISCLNLLDRCDQPLTL
          .GAGD.EV.KIM.PHFEEIYATE.SETMIWQLQKKKYRVLGINE.QNTGF.YD.ISCLN.L...DQPLT.
Retrocopy LGAGD-EVRKIMNPHFEEIYATEFSETMIWQLQKKKYRVLGINE*QNTGFHYD-ISCLNVL---DQPLTV

Parental  LKDIRSVLEPTRGRVILALVLPFHPYVEN-GGKWEKPSEILEIKGQNWEEQVNSLPEVFRKAGFVIEAFT
          LKD.R.VLE..R.RVIL..VLPFHPYVEN.GGKWE.PSEILE.K..NW.EQV.SL.EVFRKAGFV..AFT
Retrocopy LKDTRNVLEAMRDRVILVRVLPFHPYVENIGGKWEGPSEILETKR*NWDEQVSSLLEVFRKAGFVTRAFT

Parental  RLPYLCEGDMYNDYY
          RLPYLCE.DM.NDYY
Retrocopy RLPYLCEDDMCNDYY

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_1323 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_1323 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 10 parental genes, and 18 retrocopies.

Species	Parental gene accession	Retrocopies number
Ailuropoda melanoleuca	ENSAMEG00000003533	2 retrocopies	retro_amel_402, retro_amel_704,
Canis familiaris	ENSCAFG00000017710	1 retrocopy	retro_cfam_1875,
Callithrix jacchus	ENSCJAG00000020564	1 retrocopy	retro_cjac_4083,
Mustela putorius furo	ENSMPUG00000016801	2 retrocopies	retro_mputfur_1323 , retro_mputfur_1610,
Oryctolagus cuniculus	ENSOCUG00000004285	1 retrocopy	retro_ocun_754,
Otolemur garnettii	ENSOGAG00000008169	3 retrocopies	retro_ogar_1745, retro_ogar_307, retro_ogar_588,
Rattus norvegicus	ENSRNOG00000025940	1 retrocopy	retro_rnor_2623,
Sus scrofa	ENSSSCG00000030373	1 retrocopy	retro_sscr_441,
Tupaia belangeri	ENSTBEG00000003816	2 retrocopies	retro_tbel_1726, retro_tbel_2084,
Tursiops truncatus	ENSTTRG00000015624	4 retrocopies	retro_ttru_1100, retro_ttru_1466, retro_ttru_163, retro_ttru_467,