RetrogeneDB ID: retro_ogar_1745

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873563.1:6682818..6683351(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: METTL9
• Ensembl ID: ENSOGAG00000008169
• Aliases: None
• Description: methyltransferase like 9 [Source:HGNC Symbol;Acc:24586]

Sequence

>retro_ogar_1745
AAATCGTGTTGGCTATTTATCCAATTATATCATTCTTTTGTGTCATCTGTTTTTAGCCTGTTTATGTTTAGAACATCTAT
CAATGGGTTACTAGGAAGAAACTCATGTTTGTATTTTCACCAGATCAATTTTAGAGACGGCTTAAAATTAACCACAAGAG
TAAAACCCATAGACTTCTTGATTTAGGTGCTAGAGATGGAGAAGTCAGAAATCACAAGGCCTCATTTTGAAGAATCTATG
CCATTAAGCTTTCTGAAACTATGATATGGAAGCTTCATAAAAAGAAATACAGAATACTTAGTATTAATGAATGGTACAAT
ACAGAGTTCCAATATGATGTCACCAGCTGCTTGAAGTTTCTGGACTGTTATAATCAGCCCCTGACTTTGTTAAAAGGAAT
CAGAAGTGTTCTGGAGCCAACTAAAGGCAGGGTCATCCTTGCCTTGGTCCTTCCCTTCCATCCCTATGTGGAAAACACAG
GTGGAAAGTGGCAGAAACCATGAGAAATTTTGGAAATCAAGAAACAGAACTGG

Alignment

ORF - retro_ogar_1745 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 78.33 %
• Parental protein coverage: 63.25 %
• Number of stop codons detected: 3
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  KSGWLFIQLYHSFVSSVFSLFMSRTSINGLLGRGS-MFVFSPDQFQRLLKINPDWKTHRLLDLGAGDGEV
          KS.WLFIQLYHSFVSSVFSLFM.RTSINGLLGR.S.MFVFSPDQF.R.LKIN...KTHRLLDLGA.DGEV
Retrocopy KSCWLFIQLYHSFVSSVFSLFMFRTSINGLLGRNS<MFVFSPDQF*RRLKINHKSKTHRLLDLGARDGEV

Parental  TKIMSPHFEEIYATELSETMIWQLQKKKYRVLGINEWQNTGFQYDVISCLNLLDRCDQPLTLLKDIRSVL
          .......F..IYA..LSETMIW.L.KKKYR.L.INEW.NT.FQYDV.SCL..LD...QPLTLLK.IRSVL
Retrocopy -RNHKASF*RIYAIKLSETMIWKLHKKKYRILSINEWYNTEFQYDVTSCLKFLDCYNQPLTLLKGIRSVL

Parental  EPTRGRVILALVLPFHPYVENVGGKWEKPSEILEIKGQNW
          EPT.GRVILALVLPFHPYVEN.GGKW.KP.EILEIK.QNW
Retrocopy EPTKGRVILALVLPFHPYVENTGGKWQKP*EILEIKKQNW

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_1745 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 5 parental genes, and 8 retrocopies.

Species	Parental gene accession	Retrocopies number
Callithrix jacchus	ENSCJAG00000020564	1 retrocopy	retro_cjac_4083,
Mustela putorius furo	ENSMPUG00000016801	2 retrocopies	retro_mputfur_1323, retro_mputfur_1610,
Oryctolagus cuniculus	ENSOCUG00000004285	1 retrocopy	retro_ocun_754,
Otolemur garnettii	ENSOGAG00000008169	3 retrocopies	retro_ogar_1745 , retro_ogar_307, retro_ogar_588,
Rattus norvegicus	ENSRNOG00000025940	1 retrocopy	retro_rnor_2623,