RetrogeneDB ID: retro_ogar_431

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873521.1:4555862..4556761(-)
• Located in intron of: ENSOGAG00000015357

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: B4UST9_OTOGA
• Ensembl ID: ENSOGAG00000010568
• Aliases: None
• Description: GTP-binding protein 10 (Predicted) [Source:UniProtKB/TrEMBL;Acc:B4UST9]

Sequence

>retro_ogar_431
ATGGTGCATAGCGGTTGCATGTTGTTCAGAAAGTATGGAAATTTCATTGATAACCTAAGACATTTCACCAAGGGAGGAAG
TGGCGGAATGGGCTATCCTCGTTTAGGTGGAGAAGGTGGTAGAGGTGGTGATGTCTGGGTTGTAGCCCATAAAAAAATGA
CATTAAGGCAACTTAGAGACAAATATCCTTACAAACAATTTGTGGCTGAAGGAGGAGCAGATAGTCAGATTAGTGCACTG
AAGGGCTCCAAAGGAAAGGACTGTGAAGTCCTGGTACCTTTGGGTATTTCAATAACCAATGAAAATGGTAAAATTATAGG
AGAACTCAATAAAGAAGGTGATAGAATTGTGGTAGCTGAAGGAGGTCTTGGTGGTAAATTACTTACAAATTTCTTACCAT
TGAAAGGGCAGAATGAATAATTCACCTTGATCTAAAACTTGTAGCTGAAGTAGGCTTAGTAGGATTCCCAAATGCTGGAA
GATCCTCTTTGCTAAGTCGGGTTGCTCATGCAAAACCTGCAATTGTAGATTACGCATTTACAACATTAAAGCCTGAACTT
GGAAAGATTTAGTACAATGATTTCAAACAGATATCAGTAGCTGACCTTCCAGGTTTAGTAGAAGGAGCACATATGAATGA
AAGAATGAGCCACAGATTCCTGAAGCATATAAAAAGAACTAGACAACTTCTTTTTGTTGTTGACATTTGTGAATTTCAGC
TTCCTTCCAAAACTCAATACCCAACTGCTTTTGAAACTATACTACTGCTTACAAAACAGTTGGAGTTGTACAAAGAGGAA
CTTCAGACAAAACCTGCCCTCCTGGTAGTTAATAAAATGGACTTGCCAGATGCCCAAGATAAATTCCATGCATTGATGAA
CCAGCTTCAGAATTCTAAG

Alignment

ORF - retro_ogar_431 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 88.7 %
• Parental protein coverage: 84.27 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  MVHSGCVLFRKYGNFIDNLRLFTKGGSGGMGYPRLGGEGGRGGDVWVVAHKKMTLRQLKNKYPQKRFVAE
          MVHSGC.LFRKYGNFIDNLR.FTKGGSGGMGYPRLGGEGGRGGDVWVVAHKKMTLRQL..KYP.K.FVAE
Retrocopy MVHSGCMLFRKYGNFIDNLRHFTKGGSGGMGYPRLGGEGGRGGDVWVVAHKKMTLRQLRDKYPYKQFVAE

Parental  GGANSKVSALKGSKGKDYEIPVPLGISVTDENGKIIGELNKEGDRILVAEGGLGGKLLTNFLPLKGQKR-
          GGA.S..SALKGSKGKD.E..VPLGIS.T.ENGKIIGELNKEGDRI.VAEGGLGGKLLTNFLPLKGQ...
Retrocopy GGADSQISALKGSKGKDCEVLVPLGISITNENGKIIGELNKEGDRIVVAEGGLGGKLLTNFLPLKGQNE<

Parental  IIHLDLKLIADVGLVGFPNAGKSSLLSRVSHAKPAIADYAFTTLKPELGKIMYNDFKQISVADLPGLIEG
          IIHLDLKL.A.VGLVGFPNAG.SSLLSRV.HAKPAI.DYAFTTLKPELGKI.YNDFKQISVADLPGL.EG
Retrocopy IIHLDLKLVAEVGLVGFPNAGRSSLLSRVAHAKPAIVDYAFTTLKPELGKI*YNDFKQISVADLPGLVEG

Parental  AHMNKGMGHRFLKHIERTRQLLFVVDICGFQLSSKTQYRTAFETILLLTKELELYKEELQTKPALLVVNK
          AHMN..M.HRFLKHI.RTRQLLFVVDIC.FQL.SKTQY.TAFETILLLTK.LELYKEELQTKPALLVVNK
Retrocopy AHMNERMSHRFLKHIKRTRQLLFVVDICEFQLPSKTQYPTAFETILLLTKQLELYKEELQTKPALLVVNK

Parental  MDLPDAQDKFHALMNQLQNPK
          MDLPDAQDKFHALMNQLQN.K
Retrocopy MDLPDAQDKFHALMNQLQNSK

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_431 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 6 parental genes, and 6 retrocopies.

Species	Parental gene accession	Retrocopies number
Callithrix jacchus	ENSCJAG00000014212	1 retrocopy	retro_cjac_563,
Myotis lucifugus	ENSMLUG00000007418	1 retrocopy	retro_mluc_789,
Mus musculus	ENSMUSG00000040464	1 retrocopy	retro_mmus_3183,
Oryctolagus cuniculus	ENSOCUG00000014847	1 retrocopy	retro_ocun_1558,
Otolemur garnettii	ENSOGAG00000010568	1 retrocopy	retro_ogar_431 ,
Sus scrofa	ENSSSCG00000015305	1 retrocopy	retro_sscr_661,