RetrogeneDB ID: retro_ogar_382

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873520.1:31058715..31059250(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSOGAG00000000586
• Aliases: None
• Description: None

Sequence

>retro_ogar_382
TTCCATGATCCCAATTCAGATTCTGACTATGAAACCCTGAAGGCAGCAAAGGTGTGGAAACTGGCAGAGGTCTTGGCATT
GAGAAGCAGCAGTGCCAAGATGCCAAGACCCAGCAGATGGTGCTTCTGGAAAAGAAGAGTGCCACATATTCTCAGGTGCT
TCTCTGATGCCTCGTCTTGCTACAGAAGCTTTTTTAAGAACACCGGCTGAAGACCCAGTCTGAGCTCAACCACATTAATG
CCCAGTACCTGGAAATCAAGGGCAGTGCCATGATTCTTAAGCTGAGGAAGGAGGAGCTAAAGATTTTGTCTGACACTTAC
ACTGCCAAGAAAGTAAAAGTTCGTTGTCTCATTAGGGACAAATGGAGGGAGCCATTTGCCTACAAAAGCAAGACATGGAA
AAGTCAAGACAGGTCCTGAACACCTATGAGGTTCTTGGGGAGGAGTTAGACTGGCTGGTAAAAGAGTACACCCAACTCAA
GCAGGCAACTGAGAACAAGCACTGGGCCCTCCAGGAGTTCAATGAAGTATACCAT

Alignment

ORF - retro_ogar_382 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 80.75 %
• Parental protein coverage: 51.39 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  WHNPLSLCPDSDSETLKAAKVWKLAEVLAG-EKQQCQDAKSQQKEQMVLLEKKSATYSQVLLRCLTLLQR
          .H.P.S...DSD.ETLKAAKVWKLAEVLA..EKQQCQDAK.Q...QMVLLEKKSATYSQVLL.CL.LLQ.
Retrocopy FHDPNS---DSDYETLKAAKVWKLAEVLAL<EKQQCQDAKTQ---QMVLLEKKSATYSQVLL*CLVLLQK

Parental  LLQEHRLKTQSELDGINAQYLEIKCSAMILKLRKEELKILSDTYTAEKVEVHRLIRDR-LEGAIRLQEQD
          L..EHRLKTQSEL..INAQYLEIK.SAMILKLRKEELKILSDTYTA.KV.V..LIRD...EGAI.LQ.QD
Retrocopy LF*EHRLKTQSELNHINAQYLEIKGSAMILKLRKEELKILSDTYTAKKVKVRCLIRDK<MEGAICLQKQD

Parental  MEKSRQVLNNYEVLGEEFDRLVKEYTQLKQATENKRWALQEFNKAYH
          MEKSRQVLN.YEVLGEE.D.LVKEYTQLKQATENK.WALQEFN..YH
Retrocopy MEKSRQVLNTYEVLGEELDWLVKEYTQLKQATENKHWALQEFNEVYH

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_382 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 8 parental genes, and 8 retrocopies.

Species	Parental gene accession	Retrocopies number
Callithrix jacchus	ENSCJAG00000008389	1 retrocopy	retro_cjac_757,
Dasypus novemcinctus	ENSDNOG00000002575	1 retrocopy	retro_dnov_712,
Homo sapiens	ENSG00000092036	1 retrocopy	retro_hsap_469,
Gorilla gorilla	ENSGGOG00000007504	1 retrocopy	retro_ggor_447,
Myotis lucifugus	ENSMLUG00000012934	1 retrocopy	retro_mluc_1946,
Otolemur garnettii	ENSOGAG00000000586	1 retrocopy	retro_ogar_382 ,
Pongo abelii	ENSPPYG00000005651	1 retrocopy	retro_pabe_265,
Pan troglodytes	ENSPTRG00000006153	1 retrocopy	retro_ptro_352,