RetrogeneDB ID: retro_ogar_3124

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873721.1:1315688..1316075(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSOGAG00000008547
• Aliases: None
• Description: None

Sequence

>retro_ogar_3124
CGTCTGGTTACCCAAGCCATGCAGGCTTACAATGGCCATGACGAGAGGAGCTGGGCAGTGGACCATGTGCAGTGCAGTCT
GAGCTGCTGTGGGGTGCAGAACTATACCAACTGGAGCACCAACCCCTACTTCCTGGACAACGGCATCCCCCCCGCCAGTT
GCTGCATGAATGGAATGGATTGTAACTCCCAGGATCTGCGCAATCTGACCAGTGCCGCCACCAAAGTTAACCGGAAAGGT
TGCTATGATCTGGCGACCAGTTTCATGGAGACTAACGTGGGCATCATTGCTGGAATGGCATTTGGAATCACATTTTCCCA
GCTGACTGGCATGCTGCTGGCCTGCTGTCTGTCCTGGTTCATCACAGCCAATCAGTATGAGATGGTA

Alignment

ORF - retro_ogar_3124 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 82.95 %
• Parental protein coverage: 52.46 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  RTYTDAMQTYNGHDERSRAVDHVQRSLSCCGVQNYTNWSTSPYFQENGIPP-SCCMNETDCNPQDLHNLT
          R..T.AMQ.YNGHDERS.AVDHVQ.SLSCCGVQNYTNWST.PYF..NGIPP.SCCMN..DCN.QDL.NLT
Retrocopy RLVTQAMQAYNGHDERSWAVDHVQCSLSCCGVQNYTNWSTNPYFLDNGIPPASCCMNGMDCNSQDLRNLT

Parental  TAATKVNQKGCYDLVTSFMETNMGIIAGVAFGIAFSQLIGMLLACCLSRFITANQYEMV
          .AATKVN.KGCYDL.TSFMETN.GIIAG.AFGI.FSQL.GMLLACCLS.FITANQYEMV
Retrocopy SAATKVNRKGCYDLATSFMETNVGIIAGMAFGITFSQLTGMLLACCLSWFITANQYEMV

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_3124 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 8 parental genes, and 10 retrocopies.

Species	Parental gene accession	Retrocopies number
Cavia porcellus	ENSCPOG00000000183	1 retrocopy	retro_cpor_716,
Dipodomys ordii	ENSDORG00000012580	1 retrocopy	retro_dord_708,
Macropus eugenii	ENSMEUG00000002809	1 retrocopy	retro_meug_1563,
Mus musculus	ENSMUSG00000058254	1 retrocopy	retro_mmus_157,
Otolemur garnettii	ENSOGAG00000004869	1 retrocopy	retro_ogar_2827,
Otolemur garnettii	ENSOGAG00000008547	2 retrocopies	retro_ogar_1615, retro_ogar_3124 ,
Otolemur garnettii	ENSOGAG00000016713	2 retrocopies	retro_ogar_2407, retro_ogar_469,
Rattus norvegicus	ENSRNOG00000003229	1 retrocopy	retro_rnor_131,