Parental gene:

TSPAN7, ENSCPOG00000000183

Aliases:None
Description:None
Organism:Guinea Pig (Cavia porcellus)
Coordinates:scaffold_33:19628944..19759490(-)


>ENSCPOG00000000183
ATGGCATCGAGGAGAATGGAGACCAAACCTGTGATAACCTGTCTCAAAACCCTCCTCATCATCTACTCCTTCGTCTTCTG
GATCACTGGGGTGATCCTATTGGCTGTTGGAGTCTGGGGAAAGCTTACTCTGGGCACCTATATCTCCCTCATTGCTGAGA
ACTCCACAAATGCCCCCTATGTGCTCATTGGAACTGGCACCACTATTGTCGTTTTTGGCTTGTTCGGATGCTTTGCTACA
TGCCGCGGGAGCCCATGGATGCTGAAACTGTATGCCATGTTCCTGTCACTGGTATTCCTGGCTGAGCTTGTAGCTGGCAT
TTCAGGGTTTGTGTTTCGCCACGAGATTAAGGATACTTTCCTGAGGACTTACACTGATGCCATGCAGAACTACAATGGCA
ACGACGAGAGGAGCCGGGCTGTGGACCATGTGCAGCGCAGCCTGAGCTGCTGTGGTGTGCAGAACTATACCAACTGGAGC
ACCAGCCCCTACTTCCTGGAGCACGGCATCCCCCCAAGTTGCTGCATGAATGAAACTGATTGTAATCCCCAGGATTTGCA
CAATCTGACTGTGGCCGCCACCAAAGTTAACCAGAAGGGTTGTTATGATCTGGTGACCAGTTTCATGGAGACTAACATGG
GGATCATTGCTGGAGTGGCATTTGGAATCGCCTTCTCCCAGTTGATTGGCATGCTACTGGCCTGCTGTCTGTCCCGGTTC
ATCACGGCCAATCAGTATGAGATGGTG

Library Parental gene expression (RPM)
SRP017611_brain 304 .72 RPM
SRP017611_kidney 73 .39 RPM
SRP017611_liver 61 .90 RPM
SRP040447_lung 90 .39 RPM
SRP040447_skeletal_muscle 72 .83 RPM



Species Parental gene accession Homology type Retrogenes number
Cavia porcellus ENSCPOG00000009142 within_species_paralog 1 retrogene
retro_cpor_676,
Dipodomys ordii ENSDORG00000012580 ortholog_one2one 1 retrogene
retro_dord_708,
Macropus eugenii ENSMEUG00000002809 ortholog_one2one 1 retrogene
retro_meug_1563,
Otolemur garnettii ENSOGAG00000008547 ortholog_one2one 2 retrogenes
retro_ogar_1615, retro_ogar_3124,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cpor_716 64.71 54.22
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Download FASTA sequences of all ENSCPOG00000000183 retrocopies