RetrogeneDB ID: retro_ogar_2391

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873618.1:5159375..5160202(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSOGAG00000032213
• Aliases: None
• Description: None

Sequence

>retro_ogar_2391
ATGAGGAAAATTGTGCACATTCAGGCAGGTCAGTGTGGCAGACAGATCGGTGCAAAGTTCTGGGGGGTGATCAGTGATGA
ACATAGCACCTCCCCCTCTGGTACCTCCCGAGGGGACAGCCACCTGCAGCTGGACTGAATCTCTGTGTACTACAATGAAG
CCACAGGTAGCAAATATTCTCCTCATGCTATCCTGGTGGATCTAGAACCTGGGATCATGGACTCTGTTCACTCAGGTTTT
GGGGGGCAAATCTTCAGACTAAACAGTTTTGGTTTTGCTCAGTCTGGAGCAGGCAACAAATAGGCCACGGGCCACCATAG
AGAGAGGGCTGAGCTGGTTGATTCAGTCCTGGATGTGGTGTAGAAGGAGGCAGAGAGCTGTGACTGCCTGCAGGGCTTCC
GGATGACCCACTTGCTGGGCGGAGCACAGGCTCTGGAATGGGCAGGCTCCTTATCAGCGAGATTCGAGAAGAGTATCCTG
ACCCCATCATGAATACCTTCCGTGTGGTGCCTTCACCCAAAGTGTCTGATACTGTGGTTGAGCCCTACAGTGCCACCCTC
TCTGTCCATCAGTTGGTAGAGGACACTGATGAGACCTACTGCATTGACAATGAGGCCCTTGACGGCATCTGCTTCCGTAC
CCTAAACTTGACCATGCCAACTTACAGGGACCTGAATCACCTCGCCTCAGCCACCATGAGTGGTGTCACCAACTGCCTCT
GTTTCCCTGGCCGGCTCAAGGCCGACCTCCGAAAGCTGGCAGTCAACATGGTGCCCTTCCCGAGTCTGCACTTCTTCATG
CTTGGCTTTGCCCCTCTCACCAGCAGG

Alignment

ORF - retro_ogar_2391 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 80.51 %
• Parental protein coverage: 61.47 %
• Number of stop codons detected: 3
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLDRISVYYNEATGGKYVPRAILVDLEP
          MR.IVHIQAGQCG.QIGAKFW.VISDEH...P.GT..GDS.LQLD.ISVYYNEATG.KY.P.AILVDLEP
Retrocopy MRKIVHIQAGQCGRQIGAKFWGVISDEHSTSPSGTSRGDSHLQLD*ISVYYNEATGSKYSPHAILVDLEP

Parental  GTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQLTHSLG
          G.MDSV.SG..GQIFR...F.F.QSGAGN..A.GH..E.AELVDSVLDVV.KEAESCDCLQGF..TH.LG
Retrocopy GIMDSVHSGFGGQIFRLNSFGFAQSGAGNK*ATGHHRERAELVDSVLDVV*KEAESCDCLQGFRMTHLLG

Parental  GG-TGSGMDTLLISKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYD
          G..TGSGM..LLIS.IREEYPD.IMNTF.VVPSPKVSDTVVEPY.ATLSVHQLVE.TDETYCIDNEAL..
Retrocopy GA<TGSGMGRLLISEIREEYPDPIMNTFRVVPSPKVSDTVVEPYSATLSVHQLVEDTDETYCIDNEALDG

Parental  ICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSR
          ICFRTL.LT.PTY.DLNHL.SATMSGVT.CL.FPG.L.ADLRKLAVNMVPFP.LHFFM.GFAPLTSR
Retrocopy ICFRTLNLTMPTYRDLNHLASATMSGVTNCLCFPGRLKADLRKLAVNMVPFPSLHFFMLGFAPLTSR

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_2391 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 13 parental genes, and 29 retrocopies.

Species	Parental gene accession	Retrocopies number
Bos taurus	ENSBTAG00000006969	2 retrocopies	retro_btau_471, retro_btau_55,
Canis familiaris	ENSCAFG00000000443	1 retrocopy	retro_cfam_1860,
Echinops telfairi	ENSETEG00000013572	1 retrocopy	retro_etel_641,
Gorilla gorilla	ENSGGOG00000022655	4 retrocopies	retro_ggor_2388, retro_ggor_244, retro_ggor_2519, retro_ggor_2651,
Macropus eugenii	ENSMEUG00000015992	1 retrocopy	retro_meug_978,
Macaca mulatta	ENSMMUG00000023684	2 retrocopies	retro_mmul_2501, retro_mmul_375,
Mustela putorius furo	ENSMPUG00000011690	3 retrocopies	retro_mputfur_1123, retro_mputfur_607, retro_mputfur_807,
Nomascus leucogenys	ENSNLEG00000005348	1 retrocopy	retro_nleu_498,
Otolemur garnettii	ENSOGAG00000005927	2 retrocopies	retro_ogar_3410, retro_ogar_3450,
Otolemur garnettii	ENSOGAG00000032213	1 retrocopy	retro_ogar_2391 ,
Ochotona princeps	ENSOPRG00000014770	4 retrocopies	retro_opri_1106, retro_opri_237, retro_opri_46, retro_opri_656,
Pongo abelii	ENSPPYG00000016419	4 retrocopies	retro_pabe_2920, retro_pabe_3210, retro_pabe_3698, retro_pabe_467,
Pan troglodytes	ENSPTRG00000017939	3 retrocopies	retro_ptro_151, retro_ptro_2527, retro_ptro_2677,