RetrogeneDB ID: retro_ogar_1470

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873548.1:1346540..1347083(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: GNAI2
• Ensembl ID: ENSOGAG00000012525
• Aliases: None
• Description: guanine nucleotide binding protein (G protein), alpha inhibiting activity polypeptide 2 [Source:HGNC Symbol;Acc:4385]

Sequence

>retro_ogar_1470
ATAGGCTGCACCATGAGCACTGAGGACAAGATGGCCCTGAGTGCTCTAAGATGATCTATTAGAAATCTTCAGGAGGACAC
CAAAAAGACAGCATGCAAGGTGAAGTTGCGCTGTTGGGTGCTGGTGAGTCGGGACAGCACCATTATTAAGCAAATGAAAA
TCATCCACGAGGATGGCTATTCCAAGGAGGAATGCCAGCAGTATCAGGCAGTTGTCCACAGCAATACCATCCAGTCCATC
ATGGCCATCATCAAAGCCATGACCAACCTGCAGATTTACTTTGCTGACCACTCCCGTGCAGACAATGCCAGGCAGTTGTT
CGTACTGTCCTGCACTGCTGAAGAGCAGCCTGTGCTCCCTGAGGACCTGACTGGTATCATCCAGTGGCTCTGGGATGACC
ATGGTGTGCTGGCCTGCTTTGGCCGATGAAGGTAATATTAGCTCCATGGCTCACCTGCTTATTACCTGAATGACCTGGAG
TGCATTGCACAGAGTAACTGCATGTCCACACAGCAGGATATGCTGTGGATTCTTGTGAAGAGC

Alignment

ORF - retro_ogar_1470 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 65.38 %
• Parental protein coverage: 51.27 %
• Number of stop codons detected: 4
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MGCTVSAEDKAAAERSKMIDKNLREDGEKAAREVKLLLLGAGESGKSTIVKQMKIIHEDGYSEEECRQYR
          .GCT.S.EDK.A.........NL.ED..K.A..VK.L......S..STI.KQMKIIHEDGYS.EEC.QY.
Retrocopy IGCTMSTEDKMALSALR*SIRNLQEDTKKTACKVK-LRCWVLVSRDSTIIKQMKIIHEDGYSKEECQQYQ

Parental  AVVYSNTIQSIMAIVKAMANLQIEFADHSRVDDARQLFALSCTAEEQGVLPEDLSSVIRRLWADHGVQAC
          AVV.SNTIQSIMAI.KAM.NLQI.FADHSR.D.ARQLF.LSCTAEEQ.VLPEDL...I..LW.DHGV.AC
Retrocopy AVVHSNTIQSIMAIIKAMTNLQIYFADHSRADNARQLFVLSCTAEEQPVLPEDLTGIIQWLWDDHGVLAC

Parental  FGRSREYQLNDSAAYYLNDLERIAQSDYIPTQQDVLRTRVKT
          FGR.R.Y.L..S.AYYLNDLE.IAQS....TQQD.L...VK.
Retrocopy FGR*R*Y*LHGSPAYYLNDLECIAQSNCMSTQQDMLWILVKS

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_1470 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 7 parental genes, and 7 retrocopies.

Species	Parental gene accession	Retrocopies number
Ciona intestinalis	ENSCING00000005305	1 retrocopy	retro_cint_14,
Callithrix jacchus	ENSCJAG00000004925	1 retrocopy	retro_cjac_1091,
Ciona savignyi	ENSCSAVG00000001800	1 retrocopy	retro_csav_19,
Felis catus	ENSFCAG00000007008	1 retrocopy	retro_fcat_157,
Otolemur garnettii	ENSOGAG00000012525	1 retrocopy	retro_ogar_1470 ,
Otolemur garnettii	ENSOGAG00000013587	1 retrocopy	retro_ogar_993,
Rattus norvegicus	ENSRNOG00000016592	1 retrocopy	retro_rnor_505,