RetrogeneDB ID: retro_ogar_993

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873532.1:29460226..29461050(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: GNAI3
• Ensembl ID: ENSOGAG00000013587
• Aliases: None
• Description: guanine nucleotide binding protein (G protein), alpha inhibiting activity polypeptide 3 [Source:HGNC Symbol;Acc:4387]

Sequence

>retro_ogar_993
ATGGGCTGCACATTGAGCAGTATGGACAAGGCAGTGGTGGAGCGTAACAAGATGATCGACTGCAACTTGCAGGTGAACGG
GGAGAAAGCAGCCAAGGAAGTGAAGCTATTGCTACTCAGTGCTGGAGAATCTGGTAAAAGCACCATCGTGAAGCAGATGA
AAATCGTTCACAGGATGGCTATTCAGAGGAAGAATGTAAACAATATAAAGTAGTTGTCCACAGTAATACTATACAGTCCA
TCATTGCAATCATAAGAGCTATGGACCGGCTAAAGATTGACGCTGGGGAAGCTGCCAGAGCAGATGATGCCAGGCAATTA
TTTGTTTTAGCTGGCAGTGCTGAAGAAGAAGTCATGACTCCAAAACTAGCAGGAGTGATTAAACGGTTGTGGTGAGATGG
TGGGGTGCAAGCTTGCTTCAGCATATCCAGGCAACGTCAACTCAATGGTTCTGCCTCATATTACCTAAATGATTTGGATG
GAATATCCCAAACCAACTACATCCCAACTCAGCAAGATGTGCGTTGGACAAGAGTGAAGACAACAGGAATTGTGGAAACA
CATTTTACCTTCAAAGACCTATACTTCAAGATGTTTGATGTAGGTGGCCAAAGATCAGCATGAAAAAAGTGGATTTACTG
TTTTGAGGGAGTGACAGGAATTATCTTCTGTGTGGCCCTCAGTGATTATGATCTTGTTCTGGCTGAGGATGAGGAAATGA
ACTGTATGCATGAAAGCATGAAACTGTTCGATAGCATTTGTAATAACAAATGGTTTACAGACACTTCAATCATTTTTTTC
CTTAACAAGAAAGACCTTTTTGAG

Alignment

ORF - retro_ogar_993 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 89.13 %
• Parental protein coverage: 77.68 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  MGCTLSAEDKAAVERSKMIDRNLRVDGEKAAKEVKLLLLGAGESGKSTIVKQMKIIH-EDGYSEEECKQY
          MGCTLS..DKA.VER.KMID.NL.V.GEKAAKEVKLLLL.AGESGKSTIVKQMKI.H..DGYSEEECKQY
Retrocopy MGCTLSSMDKAVVERNKMIDCNLQVNGEKAAKEVKLLLLSAGESGKSTIVKQMKIVH<QDGYSEEECKQY

Parental  KVVVYSNTIQSIIAIIRAMGRLKIDFGEAARADDARQLFVLAGSAEEGVMTPELAGVIKRLWRDGGVQAC
          KVVV.SNTIQSIIAIIRAM.RLKID.GEAARADDARQLFVLAGSAEE.VMTP.LAGVIKRLW.DGGVQAC
Retrocopy KVVVHSNTIQSIIAIIRAMDRLKIDAGEAARADDARQLFVLAGSAEEEVMTPKLAGVIKRLW*DGGVQAC

Parental  FSRSREYQLNDSASYYLNDLDRISQTNYIPTQQDVLRTRVKTTGIVETHFTFKDLYFKMFDVGGQRSERK
          FS.SR..QLN.SASYYLNDLD.ISQTNYIPTQQDV..TRVKTTGIVETHFTFKDLYFKMFDVGGQRS..K
Retrocopy FSISRQRQLNGSASYYLNDLDGISQTNYIPTQQDVRWTRVKTTGIVETHFTFKDLYFKMFDVGGQRSA*K

Parental  KWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFE
          KWI.CFEGVT.IIFCVALSDYDLVLAEDEEMN.MHESMKLFDSICNNKWFTDTSII.FLNKKDLFE
Retrocopy KWIYCFEGVTGIIFCVALSDYDLVLAEDEEMNCMHESMKLFDSICNNKWFTDTSIIFFLNKKDLFE

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_993 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 8 parental genes, and 8 retrocopies.

Species	Parental gene accession	Retrocopies number
Anolis carolinensis	ENSACAG00000010970	1 retrocopy	retro_acar_40,
Choloepus hoffmanni	ENSCHOG00000012718	1 retrocopy	retro_chof_359,
Ciona intestinalis	ENSCING00000005305	1 retrocopy	retro_cint_14,
Ciona savignyi	ENSCSAVG00000001800	1 retrocopy	retro_csav_19,
Otolemur garnettii	ENSOGAG00000012525	1 retrocopy	retro_ogar_1470,
Otolemur garnettii	ENSOGAG00000013587	1 retrocopy	retro_ogar_993 ,
Tupaia belangeri	ENSTBEG00000015771	1 retrocopy	retro_tbel_2449,
Tarsius syrichta	ENSTSYG00000000556	1 retrocopy	retro_tsyr_288,