RetrogeneDB ID: retro_ogar_1139

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873536.1:20947717..20948287(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSOGAG00000002521
• Aliases: None
• Description: None

Sequence

>retro_ogar_1139
AATAGGAATCATAAACATAAAAAGAGGAAATACAAACCAACAGGAAGAAAAAGGGGAAGACCAAAAGGAAGGAAAAATAC
AAGAAGTTCACGAACAGATAAGAAACTATTTAACAAAGGACCTGGGTTCCCATTTGTGGAATCAGAGAATGAAGGAAAAC
CATTACCTTGGAGAAAAATTTTAACTTATGAGCAAGCTGTTGCAAGAGGATTTTTCAACTATATCGAAAAACTGAAGTAT
GAGCACTATCTTAAAGAATCTTTGAATCAAATGGATGCTGGTGAAGATTTAGAAAAGGAAGATTTTGATAGTCGTAGATA
CAAGTATTTGAATGATGATGGATCCATTTCTCCTATCGAAGAGTCAGCAGCAGAGGATGAGGATGCAGCACATGTTGAAC
ATGGTGAATGTGATATCACATTGGGCGCAGATAGTAGTTTCATAAGAAGTACTGATTTCCCAAGGAAGATCAATGTATAT
TTAGAACAAAATAATAGTACTAAAGAAGCTGCTTTGTCTAAAAAGAGAGCGACAAGGGCCAGATGCATTGGACAGAGGAC
ACCACAGCCT

Alignment

ORF - retro_ogar_1139 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 83.16 %
• Parental protein coverage: 69.0 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  NRKHKRKKRKYKPTGRKRGRPKGRKNTRSSRTDKKLFNKGPGFPFVESENEGKPLPWRKILTYEQAVARG
          NR.HK.....................TRSSRTDKKLFNKGPGFPFVESENEGKPLPWRKILTYEQAVARG
Retrocopy NRNHKHXXXXXXXXXXXXXXXXXXXXTRSSRTDKKLFNKGPGFPFVESENEGKPLPWRKILTYEQAVARG

Parental  FFNYIEKLKYEHYLKESLNQMDAGEDLEKEDFDSRRYKYLDDDGSISPIEESVAEDEDAAH---GECDIT
          FFNYIEKLKYEHYLKESLNQMDAGEDLEKEDFDSRRYKYL.DDGSISPIEES.AEDEDAAH...GECDIT
Retrocopy FFNYIEKLKYEHYLKESLNQMDAGEDLEKEDFDSRRYKYLNDDGSISPIEESAAEDEDAAHVEHGECDIT

Parental  LGADSSFIISSDFPRKINVYLEQNNGTKEAALSKKRATRARSIGQRTPRP
          LGADSSFI.S.DFPRKINVYLEQNN.TKEAALSKKRATRAR.IGQRTP.P
Retrocopy LGADSSFIRSTDFPRKINVYLEQNNSTKEAALSKKRATRARCIGQRTPQP

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_1139 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 7 parental genes, and 8 retrocopies.

Species	Parental gene accession	Retrocopies number
Choloepus hoffmanni	ENSCHOG00000013436	1 retrocopy	retro_chof_405,
Myotis lucifugus	ENSMLUG00000011431	1 retrocopy	retro_mluc_2033,
Monodelphis domestica	ENSMODG00000008546	1 retrocopy	retro_mdom_1216,
Oryctolagus cuniculus	ENSOCUG00000001096	2 retrocopies	retro_ocun_101, retro_ocun_23,
Otolemur garnettii	ENSOGAG00000002521	1 retrocopy	retro_ogar_1139 ,
Sarcophilus harrisii	ENSSHAG00000005874	1 retrocopy	retro_shar_566,
Tarsius syrichta	ENSTSYG00000014258	1 retrocopy	retro_tsyr_1107,