RetrogeneDB ID: retro_mluc_2033

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429994:905889..906352(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000011431
• Aliases: None
• Description: None

Sequence

>retro_mluc_2033
AACTACATAACATCATCTAATTCAACTATGGAAATTGGAAATCAAAGTGATAACTCTTCCTCTGGTAGCAGCTTACTTAA
AACCCAGTGTTTCCTTACTCACCTAAATGGAGGCATAGAAATCCTATTAGAAAATTTGTTCATTCACCTGAAAATGTTCA
AGCAAGAGATTCATCAAGTGACTCATATTTAGAACCAAGACCATTGACTTTGAAAGCTATTTTTGAAAGATTCTGAAAAA
AAGGAAGAAATGTAAAAAGAGGAAATATAAGTCAACAGGAAGACCAAGGGGAAGACCAAGAGGAAAGAAAAACACTAGGT
CACAAATAAATAAGAAACAATTTAAAGATAAAAGACCTGGGCTCCCATTTTTAGAATCAGAGAATGGAGGAAAACTATTA
CCTTGGAGAAAACTTTTAACCTTTGAACAAGTAGCAGCAAGAGGATTTTTCAACTACTTTCAA

Alignment

ORF - retro_mluc_2033 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 60.13 %
• Parental protein coverage: 56.52 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  DYITVSDSAMEIENQNDSSSSDSSLFKTQCV-PSSPKRRQRNPIRKCVHSLESVQERDSSSDSSIEPRP-
          .YIT.S.S.MEI.NQ.D.SSS.SSL.KTQC..P.SPK.R.RNPIRK.VHS.E.VQ.RDSSSDS..EPRP.
Retrocopy NYITSSNSTMEIGNQSDNSSSGSSLLKTQCF<PYSPKWRHRNPIRKFVHSPENVQARDSSSDSYLEPRP<

Parental  LTLKAIFERFKKKKPKKRKKRKYKPTGRPMGRPKGRKNSRSQISKKQLKVKRPQFPFIESENGRKPIPWR
          ......F....KK..KK.KKRKYK.TGRP.GRP.G.KN.RSQI.KKQ.K.KRP..PF.ESE.........
Retrocopy IDFESYF*KILKKR-KKCKKRKYKSTGRPRGRPRGKKNTRSQINKKQFKDKRPGLPFLESEXXXXXXXXX

Parental  KILTFEQAVARGFFNYLE
          .....EQ..ARGFFNY..
Retrocopy XXXXXEQVAARGFFNYFQ

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_2033 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 7 parental genes, and 8 retrocopies.

Species	Parental gene accession	Retrocopies number
Choloepus hoffmanni	ENSCHOG00000013436	1 retrocopy	retro_chof_405,
Myotis lucifugus	ENSMLUG00000011431	1 retrocopy	retro_mluc_2033 ,
Monodelphis domestica	ENSMODG00000008546	1 retrocopy	retro_mdom_1216,
Oryctolagus cuniculus	ENSOCUG00000001096	2 retrocopies	retro_ocun_101, retro_ocun_23,
Otolemur garnettii	ENSOGAG00000002521	1 retrocopy	retro_ogar_1139,
Sarcophilus harrisii	ENSSHAG00000005874	1 retrocopy	retro_shar_566,
Tarsius syrichta	ENSTSYG00000014258	1 retrocopy	retro_tsyr_1107,