RetrogeneDB ID: retro_mputfur_770

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL896946.1:8471823..8472144(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: MOB1A
• Ensembl ID: ENSMPUG00000007824
• Aliases: None
• Description: MOB kinase activator 1A [Source:HGNC Symbol;Acc:16015]

Sequence

>retro_mputfur_770
TTGAGCTACCTCTTCAGCTGCCATTCTTCTAAAATATTCAAACCAAAGAAGAATATGCCTGAGGGTTCTCATCAGCTCTT
AAAACAGGCAGAAGCAACTCTAAGAAGTGGAAATCTGAGACAAACTCTTATGTTGCCAGAGAGAGAGGACTTCAGTGAAT
GGATTGCAGTTAACACTGTAGATTTCTTCAACCTGATCAACATCCTGTATGGAACTATTACAGAATTCTGCACTGAGGCA
AGCTGTCCAGTCAGGTCTGCAGGTCCAAGATACGAATATCATTGGGAAAATGGTACTAATATCAAAAAGCCAATCAAATG
T

Alignment

ORF - retro_mputfur_770 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 81.65 %
• Parental protein coverage: 50.46 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MSFLFSSRSSKTFKPKKNIPEGSHQYELLKHAEATLGSGNLRQAVMLPEGEDLNEWIAVNTVDFFNQINM
          .S.LFS..SSK.FKPKKN.PEGSHQ..LLK.AEATL.SGNLRQ..MLPE.ED..EWIAVNTVDFFN.IN.
Retrocopy LSYLFSCHSSKIFKPKKNMPEGSHQ--LLKQAEATLRSGNLRQTLMLPEREDFSEWIAVNTVDFFNLINI

Parental  LYGTITEFCTEASCPVMSAGPRYEYHWADGTNIKKPIKC
          LYGTITEFCTEASCPV.SAGPRYEYHW..GTNIKKPIKC
Retrocopy LYGTITEFCTEASCPVRSAGPRYEYHWENGTNIKKPIKC

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_770 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_770 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 8 parental genes, and 13 retrocopies.

Species	Parental gene accession	Retrocopies number
Ailuropoda melanoleuca	ENSAMEG00000017359	1 retrocopy	retro_amel_1889,
Canis familiaris	ENSCAFG00000008735	1 retrocopy	retro_cfam_2054,
Dasypus novemcinctus	ENSDNOG00000012838	3 retrocopies	retro_dnov_1948, retro_dnov_2226, retro_dnov_337,
Echinops telfairi	ENSETEG00000018245	1 retrocopy	retro_etel_425,
Macaca mulatta	ENSMMUG00000015208	2 retrocopies	retro_mmul_1299, retro_mmul_297,
Mustela putorius furo	ENSMPUG00000007824	2 retrocopies	retro_mputfur_754, retro_mputfur_770 ,
Otolemur garnettii	ENSOGAG00000003504	1 retrocopy	retro_ogar_2688,
Rattus norvegicus	ENSRNOG00000042657	2 retrocopies	retro_rnor_2544, retro_rnor_2545,