RetrogeneDB ID: retro_mputfur_754

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL896945.1:725892..726248(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: MOB1A
• Ensembl ID: ENSMPUG00000007824
• Aliases: None
• Description: MOB kinase activator 1A [Source:HGNC Symbol;Acc:16015]

Sequence

>retro_mputfur_754
GAACTCTGCACTGAAGCAAGCTGTCTAGTCATGTCTGCAGGTCCAAGATCTGAATATCATTGGGAAGATGCTATTAATAT
TAAGGCCCAGCCAAAGGTTCTGTTCCAAAATATATTGACTATTTGATGGTTTGAGTTCAGGGTTAACTTGACCATGAAAT
CCTTTTTCCTTTTAAGATTGGTGTTCCATTTTCTCAAAACTTTGTATCTGTGATAAAGACTATTCTAAAGCATTTGTTCA
AGGTTTATATCCATATTTCTTGCCAACACTTTGATTCTGTGATGCAGCTGCAAGGAAAGACCTGCCACAACACACATCCT
TTAAGTATTTTTATTTGTTTCAAAGTTCAATTTCAT

Alignment

ORF - retro_mputfur_754 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 65.0 %
• Parental protein coverage: 54.63 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  EFCTEASCPVMSAGPRYEYHWADGTNIKK-PIKCSAPKYIDYLMTWVQDQLDDETLFPSKIGVPFPKNFM
          E.CTEASC.VMSAGPR.EYHW.D..NIK..P.K.S.PKYIDYLM..VQ..LD.E.LFP.KIGVPF..NF.
Retrocopy ELCTEASCLVMSAGPRSEYHWEDAINIKA<PAKGSVPKYIDYLMV*VQG*LDHEILFPFKIGVPFSQNFV

Parental  SVAKTILKRLFRVYAHIYHQHFDSVMQLQEEAHLNT-SFKHFIFFVQEFN
          SV.KTILK.LF.VY.HI..QHFDSVMQLQ.....NT.....FI.F...F.
Retrocopy SVIKTILKHLFKVYIHISCQHFDSVMQLQGKTCHNTHPLSIFICFKVQFH

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_754 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_754 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 8 parental genes, and 13 retrocopies.

Species	Parental gene accession	Retrocopies number
Ailuropoda melanoleuca	ENSAMEG00000017359	1 retrocopy	retro_amel_1889,
Canis familiaris	ENSCAFG00000008735	1 retrocopy	retro_cfam_2054,
Dasypus novemcinctus	ENSDNOG00000012838	3 retrocopies	retro_dnov_1948, retro_dnov_2226, retro_dnov_337,
Echinops telfairi	ENSETEG00000018245	1 retrocopy	retro_etel_425,
Macaca mulatta	ENSMMUG00000015208	2 retrocopies	retro_mmul_1299, retro_mmul_297,
Mustela putorius furo	ENSMPUG00000007824	2 retrocopies	retro_mputfur_754 , retro_mputfur_770,
Otolemur garnettii	ENSOGAG00000003504	1 retrocopy	retro_ogar_2688,
Rattus norvegicus	ENSRNOG00000042657	2 retrocopies	retro_rnor_2544, retro_rnor_2545,