RetrogeneDB ID: retro_mputfur_758

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL896945.1:7915738..7916065(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMPUG00000003658
• Aliases: None
• Description: None

Sequence

>retro_mputfur_758
ATGGCCCTGACTTTGGCTTACTGGGATATCTATGGGCTGGCTTATTCAATCCACCTGCTTCTGAAACACACAGACTCAAA
ACTGTGAGGACAAGAAACGTGTGATGGAGGATGCCCCAACTCTGACTGAAGTCAGTGGCTGACTGAAACATTCAAGTTGA
GCATGGACTTTCTCAAACTGCCCTACTTAATTGATAAAACTCATGAGATCACCCAGAGCCATGTCTTCCTTCACTGCATT
GCTCACAAACACAACCTATGAGGGAAAACAGAAGAGAAGATTTGTGTGGACATTTTGAAGAACTAGGTTACAAACACCTC
CAATCAA

Alignment

ORF - retro_mputfur_758 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 59.82 %
• Parental protein coverage: 50.46 %
• Number of stop codons detected: 3
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  MAAILGYWDIRGLAHAIRLLLEYTDSPY-EEKKYTMGDAP-DYDRSQWLNEKFKLGLDFPNLPYLIDGAH
          MA..L.YWDI.GLA..I.LLL..TDS...E.KK..M.DAP...D.SQWL.E.FKL..DF..LPYLID..H
Retrocopy MALTLAYWDIYGLAYSIHLLLKHTDSKL>EDKKRVMEDAP<NSD*SQWLTETFKLSMDFLKLPYLIDKTH

Parental  KITQSNAILRYIARKHNLCGETEEEKIRVDILENQAMDTSNE
          .ITQS...L..IA.KHNL.G.T.EEKI.VDIL.N....TSN.
Retrocopy EITQSHVFLHCIAHKHNL*GKT-EEKICVDILKN*VTNTSNQ

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_758 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_758 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 10 parental genes, and 13 retrocopies.

Species	Parental gene accession	Retrocopies number
Ailuropoda melanoleuca	ENSAMEG00000004970	1 retrocopy	retro_amel_1548,
Bos taurus	ENSBTAG00000016472	1 retrocopy	retro_btau_1181,
Canis familiaris	ENSCAFG00000019812	2 retrocopies	retro_cfam_1766, retro_cfam_2062,
Equus caballus	ENSECAG00000024971	1 retrocopy	retro_ecab_1058,
Macaca mulatta	ENSMMUG00000019630	2 retrocopies	retro_mmul_1432, retro_mmul_1806,
Mustela putorius furo	ENSMPUG00000003658	1 retrocopy	retro_mputfur_758 ,
Mustela putorius furo	ENSMPUG00000004029	2 retrocopies	retro_mputfur_1215, retro_mputfur_1463,
Mus musculus	ENSMUSG00000027890	1 retrocopy	retro_mmus_204,
Pteropus vampyrus	ENSPVAG00000009559	1 retrocopy	retro_pvam_1047,
Tarsius syrichta	ENSTSYG00000007276	1 retrocopy	retro_tsyr_793,