RetrogeneDB ID: retro_mputfur_32

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL896982.1:2364617..2365268(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMPUG00000018474
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMPUG00000010471
• Aliases: None
• Description: GrpE protein homolog [Source:UniProtKB/TrEMBL;Acc:G9K3H0]

Sequence

>retro_mputfur_32
ATGGCGGCTCGGTGTGTGAGGCTGGCGGGGCAAAGTCTCCCAGCTTACCTGTCTCTCAGACCATCTCCTCGGCTGCTGTG
CACAGCTACAAAACAGAAGAACAGTGGCCAGAACCTGGAAGAGGTCGTGAGTCAGAATGAACAGAAGACAGATACTCCTT
CCCCAGAGAAGATACTCCTGGACGAGAAGGTCAAGCTAGAAGAGCAGCTGAAGGAGACTGTGGAAAAATATAAGCGAGCT
TTGGCAGACACTGAGAACTTGAGGCAGAGGAGCCAGAAGTTGGTGGAGGAGGCAAAATTATACGGCATCCAGGGCTTCTG
TAAGGACTTGCTGGAGGTCGCAGATATCTTGGAGAAGGCGACGCAGAGTGTCCCGAAGGAGGAGGTCAGAGACGACAATC
CTCACCTCAAGAACCTCTATGAGGGGCTCCTGATGACGGAGGTCCAGATCCAGAAGGTGTTCACCAAACACGGCTTGCTG
CTGCTGAACCCCGTGGGTGCCAGGTTCGACCCCTATGAGCACGAGGCCCTGTTCCACACACCAGTGGAGGGCAAGGAGCC
CGGCACGGTGGCGCTGGTCAGCAAAGTGGGGTACAAGCTGCACGGGCGCACCCTGAGACCCGCACTGGTGGGGGTGGTGA
AGGCAGCTTAG

Alignment

ORF - retro_mputfur_32 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 98.15 %
• Parental protein coverage: 93.51 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MAARCVRLARQSLPAYLSLRPSPRLLCTAMKQKNSGQNLEEDVSQNEQKTDTPSPEKILLDEKVKLEEQL
          MAARCVRLA.QSLPAYLSLRPSPRLLCTA.KQKNSGQNLEE.VSQNEQKTDTPSPEKILLDEKVKLEEQL
Retrocopy MAARCVRLAGQSLPAYLSLRPSPRLLCTATKQKNSGQNLEEVVSQNEQKTDTPSPEKILLDEKVKLEEQL

Parental  KETVEKYKRALADTENLRQRSQKLVEEAKLYGIQGFCKDLLEVADILEKATQSVPKEEVRDDNPHLKNLY
          KETVEKYKRALADTENLRQRSQKLVEEAKLYGIQGFCKDLLEVADILEKATQSVPKEEVRDDNPHLKNLY
Retrocopy KETVEKYKRALADTENLRQRSQKLVEEAKLYGIQGFCKDLLEVADILEKATQSVPKEEVRDDNPHLKNLY

Parental  EGLLMTEVQIQKVFTKHGLLRLNPVGARFDPYEHEALFHTPVEGKEPGTVALVSKVGYKLHGRTLRPALV
          EGLLMTEVQIQKVFTKHGLL.LNPVGARFDPYEHEALFHTPVEGKEPGTVALVSKVGYKLHGRTLRPALV
Retrocopy EGLLMTEVQIQKVFTKHGLLLLNPVGARFDPYEHEALFHTPVEGKEPGTVALVSKVGYKLHGRTLRPALV

Parental  GVVKAA
          GVVKAA
Retrocopy GVVKAA

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_32 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_32 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 11 parental genes, and 15 retrocopies.

Species	Parental gene accession	Retrocopies number
Canis familiaris	ENSCAFG00000014364	1 retrocopy	retro_cfam_1776,
Homo sapiens	ENSG00000109519	3 retrocopies	retro_hsap_3746, retro_hsap_3864, retro_hsap_3870,
Loxodonta africana	ENSLAFG00000002590	1 retrocopy	retro_lafr_535,
Monodelphis domestica	ENSMODG00000002955	1 retrocopy	retro_mdom_28,
Mustela putorius furo	ENSMPUG00000010471	1 retrocopy	retro_mputfur_32 ,
Nomascus leucogenys	ENSNLEG00000011822	1 retrocopy	retro_nleu_2642,
Otolemur garnettii	ENSOGAG00000032291	1 retrocopy	retro_ogar_1765,
Procavia capensis	ENSPCAG00000011314	1 retrocopy	retro_pcap_388,
Pongo abelii	ENSPPYG00000014573	1 retrocopy	retro_pabe_3235,
Pan troglodytes	ENSPTRG00000015894	3 retrocopies	retro_ptro_2544, retro_ptro_2633, retro_ptro_2636,
Sarcophilus harrisii	ENSSHAG00000007667	1 retrocopy	retro_shar_766,