RetrogeneDB ID: retro_mputfur_264

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL896900.1:7846496..7847009(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMPUG00000005457
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: SAT1
• Ensembl ID: ENSMPUG00000000112
• Aliases: None
• Description: spermidine/spermine N1-acetyltransferase 1 [Source:HGNC Symbol;Acc:10540]

Sequence

>retro_mputfur_264
ATGGCTAAATTCGTGATCTGCCCGGCCACCACCGCCGACTGCAGTGACATCCTGCGGCTGATCAAGGAACTGGCTAAATA
CGAATACATGGAAGACCAAGTAATGTTAACTGAAAAGATCTACTAGAGGATGGTTTCGGAGAGCACCCTTTCTACCACTG
CCTGGTTGCAGAAGTGCCCAAGGAGCACCAGTCTCCGGAAGGACACAGTGTTGTGGGTTTCTCCATGTACTACTTTACCT
ATGACCCATGGATAGACAAACTCTTGTATCTTGAGGACTTCTTCGTAATGAGTGATTATAGAGGCTTTGGCATAGGATCA
GAAATCCTGAAGAAATCTAAGCCAGGTTGCGATGAAATGTCGCTGCAGCAGCATGCACTTCTTGGTAGCAGAATGGAACG
AACCATCTATCAGCTTCTACAAAAGAAGAGGTGCTTCTGATCTGTCCAGCGAGGAGGGGTGGAGACTCTTCAAGATTGAC
AAGGAGTACTTGCTCAAAATGGCAGCAGAGGAG

Alignment

ORF - retro_mputfur_264 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 95.38 %
• Parental protein coverage: 100.0 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  MAKFVIRPATAADCSDILRLIKELAKYEYMEDQVVLTE-KDLLEDGFGEHPFYHCLVAEVPKEHQSPEGH
          MAKFVI.PAT.ADCSDILRLIKELAKYEYMEDQV.LTE.KDLLEDGFGEHPFYHCLVAEVPKEHQSPEGH
Retrocopy MAKFVICPATTADCSDILRLIKELAKYEYMEDQVMLTE<KDLLEDGFGEHPFYHCLVAEVPKEHQSPEGH

Parental  SVVGFAMYYFTYDPWIGKLLYLEDFFVMSDYRGFGIGSEILK-NLSQVAMKCRCSSMHFLVAEWNEPSIN
          SVVGF.MYYFTYDPWI.KLLYLEDFFVMSDYRGFGIGSEILK.NLSQVAMKCRCSSMHFLVAEWNEPSI.
Retrocopy SVVGFSMYYFTYDPWIDKLLYLEDFFVMSDYRGFGIGSEILK>NLSQVAMKCRCSSMHFLVAEWNEPSIS

Parental  FYKRRGASDLSSEEGWRLFKIDKEYLLKMAAEE
          FYKRRGASDLSSEEGWRLFKIDKEYLLKMAAEE
Retrocopy FYKRRGASDLSSEEGWRLFKIDKEYLLKMAAEE

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_264 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_264 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 8 parental genes, and 12 retrocopies.

Species	Parental gene accession	Retrocopies number
Felis catus	ENSFCAG00000004032	3 retrocopies	retro_fcat_1095, retro_fcat_332, retro_fcat_444,
Homo sapiens	ENSG00000130066	1 retrocopy	retro_hsap_2979,
Gorilla gorilla	ENSGGOG00000027873	1 retrocopy	retro_ggor_2063,
Myotis lucifugus	ENSMLUG00000004919	1 retrocopy	retro_mluc_2472,
Mustela putorius furo	ENSMPUG00000000112	1 retrocopy	retro_mputfur_264 ,
Mus musculus	ENSMUSG00000025283	2 retrocopies	retro_mmus_1621, retro_mmus_2639,
Pongo abelii	ENSPPYG00000020190	1 retrocopy	retro_pabe_2470,
Pan troglodytes	ENSPTRG00000021741	2 retrocopies	retro_ptro_2013, retro_ptro_2934,