RetrogeneDB ID: retro_mputfur_1609

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL897356.1:277103..278168(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMPUG00000016701
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: ATIC
• Ensembl ID: ENSMPUG00000007676
• Aliases: None
• Description: 5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase [Source:HGNC Symbol;Acc:794]

Sequence

>retro_mputfur_1609
ATGGCACCCAGCCAGCTCGCCTTATTTAGTGTCTCTGACAAAACGGGCCTCGTGGAATTTGCCAGAAACCTGACTTCTGT
TGGTTTGCATCTGATCGCCTCTGGAGGGACTGCGAAAGCTCTGAGGGAGGCGGGCCTGGCAGTCAGAGATGTCTCTGAGC
TGACGGGATTTCCTGAAATGTTAGGGGGGCGTGTGAAAACCTTGCATCCTGCCGTCCATGCTGGAATCTTGGCTCGTAAT
ATCCCAGAAGATAATGCTGACATGGCCAGACTTGATTTCAGTCTTATAAGAGTTGTCGTCTGCAATCTGTATCCCTTTGT
GAAGACAGTGGCTTCTCCAGATGTAACTGTTGAACAGGCTGTTGAGCAGATTGATATTGGCGGAGTAACCCTACTGAGAG
CAGCAGCCAAAAACCATGCTCGGGTGACAGTAGTATGTGAACCCGAGGACTATGCAGCTGTGTCCACAGAGATGCAGAGC
TCCGACAGCAAAGACACCTCCTTGGAGACCAGACGTCAGTTAGCCTTGAAGGCCTTCACTCATACGGCACAATATGATGA
AGCAATTTCAGATTACTTCAGGAGACAGTATAGTAAAGGAATATCTCAGATGCCTTTGAGGTATGGAATGAACCCTCATC
AGACTCCTGCCCAGTTATACACGCTGAAGCCCAAGCTTCCCATCACAGTTCTAAATGGAGCCCCTGGATTTATAAACTTG
TGTGATGCTTTGAATGCCTGGCAGCTGGTGAAGGAACTCAAAGAAGCTTTAGGCATTCCAGCTGCTGCCTCTTTCAAACA
TGTCAGCCCAGCAGGTGCTGCTGTTGGAATTCCACTCAGTGAAGACGAGGCCAAAGTCTGCATGGTCTATGATCTGTATA
AAACGCTTACACCCATATCAACTGCATATGCAAGAGCAAGAGGGGCTGATAGGATGTCTTCATTTGGTGACTTTGTTGCA
TTATCTGATGTTTGTGATGTTCCTACTGCCAAAATTATCTCCAGAGAGGTATCTGATGGTATTGTTGCCCCAGGATATGA
AGATGAAGCTTTGAAAATACTTTCT

Alignment

ORF - retro_mputfur_1609 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 99.44 %
• Parental protein coverage: 60.1 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MAPSQLALFSVSDKTGLVEFARNLTSVGLHLIASGGTAKALREAGLAVRDVSELTGFPEMLGGRVKTLHP
          MAPSQLALFSVSDKTGLVEFARNLTSVGLHLIASGGTAKALREAGLAVRDVSELTGFPEMLGGRVKTLHP
Retrocopy MAPSQLALFSVSDKTGLVEFARNLTSVGLHLIASGGTAKALREAGLAVRDVSELTGFPEMLGGRVKTLHP

Parental  AVHAGILARNIPEDNADMARLDFSLIRVVVCNLYPFVKTVASPDVTVEQAVEQIDIEGGVTLLRAAAKNH
          AVHAGILARNIPEDNADMARLDFSLIRVVVCNLYPFVKTVASPDVTVEQAVEQIDI.GGVTLLRAAAKNH
Retrocopy AVHAGILARNIPEDNADMARLDFSLIRVVVCNLYPFVKTVASPDVTVEQAVEQIDI-GGVTLLRAAAKNH

Parental  ARVTVVCEPEDYAAVSTEMQSSDSKDTSLETRRQLALKAFTHTAQYDEAISDYFRRQYSKGISQMPLRYG
          ARVTVVCEPEDYAAVSTEMQSSDSKDTSLETRRQLALKAFTHTAQYDEAISDYFRRQYSKGISQMPLRYG
Retrocopy ARVTVVCEPEDYAAVSTEMQSSDSKDTSLETRRQLALKAFTHTAQYDEAISDYFRRQYSKGISQMPLRYG

Parental  MNPHQTPAQLYTLKPKLPITVLNGAPGFINLCDALNAWQLVKELKEALGIPAAASFKHVSPAAGAAVGIP
          MNPHQTPAQLYTLKPKLPITVLNGAPGFINLCDALNAWQLVKELKEALGIPAAASFKHVSPA.GAAVGIP
Retrocopy MNPHQTPAQLYTLKPKLPITVLNGAPGFINLCDALNAWQLVKELKEALGIPAAASFKHVSPA-GAAVGIP

Parental  LSEDEAKVCMVYDLYKTLTPISTAYARARGADRMSSFGDFVALSDVCDVPTAKIISREVSDGIVAPGYED
          LSEDEAKVCMVYDLYKTLTPISTAYARARGADRMSSFGDFVALSDVCDVPTAKIISREVSDGIVAPGYED
Retrocopy LSEDEAKVCMVYDLYKTLTPISTAYARARGADRMSSFGDFVALSDVCDVPTAKIISREVSDGIVAPGYED

Parental  EALKILS
          EALKILS
Retrocopy EALKILS

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_1609 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_1609 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 7 parental genes, and 10 retrocopies.

Species	Parental gene accession	Retrocopies number
Callithrix jacchus	ENSCJAG00000011695	4 retrocopies	retro_cjac_1538, retro_cjac_2185, retro_cjac_3116, retro_cjac_706,
Microcebus murinus	ENSMICG00000014573	1 retrocopy	retro_mmur_1591,
Myotis lucifugus	ENSMLUG00000001830	1 retrocopy	retro_mluc_1370,
Monodelphis domestica	ENSMODG00000015612	1 retrocopy	retro_mdom_1074,
Mustela putorius furo	ENSMPUG00000007676	1 retrocopy	retro_mputfur_1609 ,
Mus musculus	ENSMUSG00000026192	1 retrocopy	retro_mmus_2729,
Rattus norvegicus	ENSRNOG00000015511	1 retrocopy	retro_rnor_904,