RetrogeneDB ID: retro_mputfur_1448

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL897140.1:768315..769196(+)
• Located in intron of: ENSMPUG00000018103

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: ETF1
• Ensembl ID: ENSMPUG00000009338
• Aliases: None
• Description: eukaryotic translation termination factor 1 [Source:HGNC Symbol;Acc:3477]

Sequence

>retro_mputfur_1448
ATGGCAGATGACCTCAGTGCTGCCAACAGGAACATGGAGGTCTGGAAGATCAAGAAGCTCATCAGGAGCTTGGAGGCAGC
CCACAGCAATGGGACAAGCATGATATCATTGATTATTCCTCCCAAAGACCAGATTCCACCAGCTGCAAAAATGTTAGCAG
ATGAGTTTGGAACTGTATCTAACATTAAGTCCCAAGTAAAATGTCTTTTAGTTCTGGGAGCCATTACATCTGTACAACAG
ATACACAAGCTTTAAACAAAGTACCTCCAAATGGCCTGGGTGTTTACTGGGGTACAATTGTCACAGAAGGAGGAGAGGAA
AAGAAAGTCAACATTGACTTTGAACCTTTCAAACCAATTAACACATCATTGTATTTGTGTGACAACAAATTCCATACAGA
GGTTCTCACAGTGCTCCTTTTGGATGACAGCAAATTTGGCTTCATTGTAATAGATGGTAGTGGTGCACTTTTTGGCACAC
TCCAAGGAAACACCAGAGAAGTCGTGCACAAATTCACTGTGGATCTCCCAAAGAAACATGGTAGAGGAAGTCAATCAGCC
TTGTGTTTTGCTCTTTTAAGAGTGGAAAAGTGACGTAGCTATGTTCAGAAAGTAGCTGAGACTGCTGTTCAGCTGCTTAT
TTCTGGGGACAAAGTGAATGTGGCTGGTCTGGTTTTAGCTAAATCAGCTGACTTTAAAACTGAACTAAATCAATCTGATA
TGTTTGATCAGAGGTTGCAATCAAAAGTTTTAAAATTAGTTGATATTTCCTATGTTTGTGAAAATAGATTCAACCAAGCT
ATTATGTACTGAAGCCCTCTCCAACGTGAAATTCATTCAAGAGAAGATTTTGATGAAATCAGCCAGGACACAGGCAAGTA
C

Alignment

ORF - retro_mputfur_1448 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 79.32 %
• Parental protein coverage: 66.36 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  MADDPSAADRNVEIWKIKKLIKSLEAARGNGTSMISLIIPPKDQISRVAKMLADEFGTASNIKSRVNRLS
          MADD.SAA.RN.E.WKIKKLI.SLEAA..NGTSMISLIIPPKDQI...AKMLADEFGT.SNIKS.V..L.
Retrocopy MADDLSAANRNMEVWKIKKLIRSLEAAHSNGTSMISLIIPPKDQIPPAAKMLADEFGTVSNIKSQVKCLL

Parental  VLGAITSVQQRLKL-YNKVPPNGLVVYCGTIVTEEGKEKKVNIDFEPFKPINTSLYLCDNKFHTEALTAL
          VLGAITSVQQ..KL..NKVPPNGL.VY.GTIVTE.G.EKKVNIDFEPFKPINTSLYLCDNKFHTE.LT.L
Retrocopy VLGAITSVQQIHKL<LNKVPPNGLGVYWGTIVTEGGEEKKVNIDFEPFKPINTSLYLCDNKFHTEVLTVL

Parental  LSDDSKFGFIVIDGSGALFGTLQGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKVAETA
          L.DDSKFGFIVIDGSGALFGTLQGNTREV.HKFTVDLPKKHGRG.QSAL.FA.LR.EK...YV.KVAETA
Retrocopy LLDDSKFGFIVIDGSGALFGTLQGNTREVVHKFTVDLPKKHGRGSQSALCFALLRVEK*RSYVQKVAETA

Parental  VQLFISGDKVNVAGLVLAGSADFKTELSQSDMFDQRLQSKVLKLVDISYGGENGFNQAI----ELSTEVL
          VQL.ISGDKVNVAGLVLA.SADFKTEL.QSDMFDQRLQSKVLKLVDISY..EN.FNQAI.....L..E..
Retrocopy VQLLISGDKVNVAGLVLAKSADFKTELNQSDMFDQRLQSKVLKLVDISYVCENRFNQAIMY*SPLQREIH

Parental  SNVKFIQEKKLIGRY
          S...F.......G.Y
Retrocopy SREDFDEISQDTGKY

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_1448 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_1448 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 10 parental genes, and 20 retrocopies.

Species	Parental gene accession	Retrocopies number
Canis familiaris	ENSCAFG00000001282	1 retrocopy	retro_cfam_99,
Callithrix jacchus	ENSCJAG00000006776	2 retrocopies	retro_cjac_2316, retro_cjac_4133,
Dasypus novemcinctus	ENSDNOG00000010830	3 retrocopies	retro_dnov_1925, retro_dnov_2504, retro_dnov_610,
Equus caballus	ENSECAG00000013041	1 retrocopy	retro_ecab_740,
Echinops telfairi	ENSETEG00000007362	2 retrocopies	retro_etel_1237, retro_etel_1400,
Gorilla gorilla	ENSGGOG00000000657	4 retrocopies	retro_ggor_2326, retro_ggor_2561, retro_ggor_2562, retro_ggor_2919,
Macaca mulatta	ENSMMUG00000005871	2 retrocopies	retro_mmul_1658, retro_mmul_718,
Mustela putorius furo	ENSMPUG00000009338	1 retrocopy	retro_mputfur_1448 ,
Oryctolagus cuniculus	ENSOCUG00000006650	3 retrocopies	retro_ocun_1188, retro_ocun_1614, retro_ocun_462,
Rattus norvegicus	ENSRNOG00000019450	1 retrocopy	retro_rnor_2935,