Parental gene:

ETF1, ENSOCUG00000006650

Aliases:ETF1, ERF1
Description:eukaryotic translation termination factor 1 (ETF1), mRNA [Source:RefSeq mRNA;Acc:NM_001082767]
Organism:Rabbit (Oryctolagus cuniculus)
Coordinates:3:20770474..20803894(-)


>ENSOCUG00000006650
ATGGCGGACGACCCCAGTGCTGCCGACAGGAACGTGGAAATCTGGAAGATCAAGAAGCTCATTAAGAGCTTGGAGGCGGC
CCGCGGCAATGGCACCAGCATGATATCATTGATCATTCCTCCCAAAGACCAGATTTCCCGAGTGGCAAAAATGTTAGCAG
ATGAATTTGGAACTGCATCCAACATTAAGTCACGAGTAAACCGCCTTTCAGTCCTGGGAGCCATTACATCTGTACAACAA
AGACTCAAACTTTATAACAAAGTACCTCCAAATGGTCTGGTTGTTTACTGTGGAACAATTGTAACAGAAGAAGGAAAGGA
AAAGAAAGTCAACATTGACTTTGAACCTTTCAAACCAATTAATACGTCATTGTATTTGTGTGACAACAAATTCCATACAG
AGGCTCTTACAGCACTACTTTCAGATGATAGCAAGTTTGGCTTCATTGTAATAGATGGTAGTGGTGCACTTTTTGGCACA
CTGCAGGGAAATACAAGAGAAGTCCTGCACAAATTCACTGTGGATCTCCCAAAGAAACACGGTAGAGGAGGTCAGTCAGC
CTTGCGTTTTGCCCGTTTAAGAATGGAAAAGCGACACAACTATGTTCGGAAAGTAGCAGAGACTGCTGTACAGCTGTTTA
TTTCTGGGGACAAAGTGAATGTGGCTGGTCTCGTTTTAGCTGGATCAGCTGACTTTAAAACTGAACTAAGTCAATCTGAT
ATGTTTGACCAGAGGTTGCAATCAAAAGTTTTAAAATTAGTTGATATATCCTATGGCGGTGAAAATGGATTCAACCAAGC
TATTGAGTTATCTACTGAGGTCCTCTCCAACGTGAAATTCATTCAAGAGAAGAAATTAATAGGACGATACTTTGATGAAA
TCAGTCAAGACACGGGCAAGTACTGTTTTGGAGTTGAAGATACGCTAAAAGCTTTGGAAATGGGAGCCGTAGAAATTCTA
ATAGTCTATGAAAATTTGGATATAATGAGATACGTTCTTCATTGCCAAGGCACAGAAGAGGAGAAAATTCTTTACCTAAC
TCCAGAACAAGAGAAGGATAAATCTCATTTCACAGACAAAGAGACAGGACAGGAACATGAGCTGATTGAGAGCATGCCCC
TGTTGGAATGGTTTGCTAACAACTATAAAAAATTTGGAGCTACATTGGAAATTGTCACAGATAAGTCACAAGAAGGATCC
CAGTTTGTGAAAGGATTTGGTGGAATTGGAGGTATCTTGCGGTACCGAGTAGATTTCCAGGGAATGGAATATCAAGGAGG
AGACGATGAATTTTTTGACCTTGATGACTACTAG

Library Parental gene expression (RPM)
SRP017611_brain 53 .04 RPM
SRP017611_kidney 79 .97 RPM
SRP017611_liver 51 .41 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000001282 ortholog_many2many 1 retrogene
retro_cfam_99,
Callithrix jacchus ENSCJAG00000006776 ortholog_one2many 2 retrogenes
retro_cjac_2316, retro_cjac_4133,
Dasypus novemcinctus ENSDNOG00000010830 ortholog_one2many 3 retrogenes
retro_dnov_1925, retro_dnov_2504, retro_dnov_610,
Equus caballus ENSECAG00000013041 ortholog_one2many 1 retrogene
retro_ecab_740,
Echinops telfairi ENSETEG00000007362 ortholog_one2many 2 retrogenes
retro_etel_1237, retro_etel_1400,
Gorilla gorilla ENSGGOG00000000657 ortholog_one2many 4 retrogenes
retro_ggor_2326, retro_ggor_2561, retro_ggor_2562, retro_ggor_2919,
Macaca mulatta ENSMMUG00000005871 ortholog_many2many 2 retrogenes
retro_mmul_1658, retro_mmul_718,
Mustela putorius furo ENSMPUG00000009338 ortholog_one2many 1 retrogene
retro_mputfur_1448,
Rattus norvegicus ENSRNOG00000019450 ortholog_one2many 1 retrogene
retro_rnor_2935,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ocun_462 93.58 74.83
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2. retro_ocun_1188 58.10 64.07
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3. retro_ocun_1614 94.77 100.00
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Download FASTA sequences of all ENSOCUG00000006650 retrocopies