RetrogeneDB ID: retro_mputfur_1294

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL897071.1:738016..738711(+)
• Located in intron of: ENSMPUG00000002607

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMPUG00000016512
• Aliases: None
• Description: None

Sequence

>retro_mputfur_1294
ATAATCCTGCTGGAGGTGAGCAATGACATCATTGAGGTCACACGCAAGTTAAAAAATGTGGCCGCTGGTCACAAACCAGA
AGCAGTAGAAGTAAAACTTGCAGATTTTGTTGGGAGTCCTCTATCATATTTCAAATCCCAATGGAGAAAAAAAAAAGTGA
TGGTCAGTGTTTCTTTGAAATTCTACAAGGAACTTCAGGCACGGGATACTGATGAGTTAATAAAGAGGATGTACAGAGTT
TTCTTGGTAAATCACAAACCAGGATACAATGTCTCTTTGCTATATGACCTTGATAATCTTGCCGGCATCCAAGGATTCCA
TTGGGCATCAGGCTGGCATGTTGACATTAAATTGTTTTGCCTCTGTCTTTGAGAAATGCTTCTAATCCCAAGATGAGGGC
AGAGAAGGAGAGAACGGTGCATTTATCTGTTAGAGGAATGGTGAGACCATGTATGTTTAGTCTAAAAAGGATAGCGTCAC
AGTAGTCTTCAGTACAGTGTTTACGGATAACGATGATGTAGTGATTGGAAAAGTGTCCATGCAAGAGTTCAAACAAGGAC
ACACAGCCCCCATAGTTCCCCCTTAGCCACCGGGAACCTCCTCTGGAGCTGAAAGACACAGATGCTGCAGCAGGTGACAA
CACTGGCTCTATAACCTTCATTCCCTCACCACACCGAGGCCAGGGCTCGAGAAAG

Alignment

ORF - retro_mputfur_1294 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 69.71 %
• Parental protein coverage: 79.0 %
• Number of stop codons detected: 3
• Number of frameshifts detected: 4

Retrocopy - Parental Gene Alignment:

Parental  MILLEVNNRIIEETLALKFENAAAGNKPEAVEVTFADFDG-VLYHISNPNGDKTK-VMVSISLKFYKELQ
          .ILLEV.N.IIE.T..LK..N.AAG.KPEAVEV..ADF.G.VLYHISNPNG.....VMVS.SLKFYKELQ
Retrocopy IILLEVSNDIIEVTRKLK--NVAAGHKPEAVEVKLADFVG>VLYHISNPNGXXXX<VMVSVSLKFYKELQ

Parental  AHGADELLKRVYGSFLVNPESGYNVSLLYDLENL-PASKDSIVHQAGMLKRNCFASVFEKYFQFQEEGKE
          A...DEL.KR.Y..FLVN...GYNVSLLYDL.NL.PASKDSI.HQAGML..NCFASVFEK.F..Q.EG.E
Retrocopy ARDTDELIKRMYRVFLVNHKPGYNVSLLYDLDNL>PASKDSIGHQAGMLTLNCFASVFEKCF*SQDEGRE

Parental  GENRAVIHYRDDETMYVESKKDRVTVVFSTVFKDDDDVVIGKVFMQEFKEGRRASHTAPQV-LFSHREPP
          GEN.A.I..R..ETMYV.SKKD.VTVVFSTVF.D.DDVVIGKV.MQEFK.G....HTAP.V...SHREPP
Retrocopy GENGAFIC*RNGETMYV*SKKDSVTVVFSTVFTDNDDVVIGKVSMQEFKQG----HTAPIV>PLSHREPP

Parental  LELKDTDAAVGDNIGYITFVLFPRHTNASAR
          LELKDTDAA.GDN.G.ITF...P.....S..
Retrocopy LELKDTDAAAGDNTGSITFIPSPHRGQGSRK

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_1294 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_1294 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 14 parental genes, and 19 retrocopies.

Species	Parental gene accession	Retrocopies number
Ailuropoda melanoleuca	ENSAMEG00000003197	2 retrocopies	retro_amel_1771, retro_amel_1846,
Canis familiaris	ENSCAFG00000014618	1 retrocopy	retro_cfam_513,
Choloepus hoffmanni	ENSCHOG00000010564	5 retrocopies	retro_chof_1845, retro_chof_2103, retro_chof_2226, retro_chof_2227, retro_chof_473,
Dasypus novemcinctus	ENSDNOG00000006037	1 retrocopy	retro_dnov_5,
Dipodomys ordii	ENSDORG00000016107	1 retrocopy	retro_dord_624,
Felis catus	ENSFCAG00000002370	1 retrocopy	retro_fcat_732,
Loxodonta africana	ENSLAFG00000007414	1 retrocopy	retro_lafr_593,
Myotis lucifugus	ENSMLUG00000004161	1 retrocopy	retro_mluc_390,
Mustela putorius furo	ENSMPUG00000016512	1 retrocopy	retro_mputfur_1294 ,
Mus musculus	ENSMUSG00000006304	1 retrocopy	retro_mmus_1556,
Oryctolagus cuniculus	ENSOCUG00000005516	1 retrocopy	retro_ocun_483,
Pteropus vampyrus	ENSPVAG00000017133	1 retrocopy	retro_pvam_1216,
Sorex araneus	ENSSARG00000003326	1 retrocopy	retro_sara_283,
Tarsius syrichta	ENSTSYG00000001037	1 retrocopy	retro_tsyr_557,