RetrogeneDB ID: retro_mputfur_1064

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL897005.1:1375378..1376095(+)
• Located in intron of: ENSMPUG00000014424

Retrocopy information

• Ensembl ID: ENSMPUG00000014462
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMPUG00000000321
• Aliases: None
• Description: None

Sequence

>retro_mputfur_1064
ATGCAGAATGTGATTAACACAGTGAAGGGAAAGGCACTGGAAGTAGCTGAGTACCTGACCCCAGTCTTCAAGGAATCAAA
GTTTAAGGAAACAGGTGTTATCACCCCAGAAGAGTTTGTAGCGGATGGAGATCACTTAGTCCACCACTATCCAACATGGC
AATGGGCTACAGGGGAAGAATTGAAAGTGAAGGCATACCTACCAACAGGCAAACAATTGTTGGTTACCAAAAATGTGCGA
TGCTACAACCAGTGCAAACAGATGGAATATTCAGATGAATTGGAAGCTATCATTGAAGATGAATATGGTGATGGGGGATG
GGTAGATACTTATCATAACACAGGTATTGCAGGAATAACTGAAGCAGTTAAGGAGATTACATTGGAAAGCAAGGACAGAA
TAAAACATCAAGACTGCGCAGCAATATGTGAGGAGGAGGAAGAAGATGATGAAGGAGAACCTGCAGATATGGAAGAACAT
GAAGAAAGTGGATTGTTGGAAACAGATGAGGCTACCCTAAACACAAGAGAAACAGGAGAAGCTTGTAAAACTAAAACTGA
TGCTGGAAGTGAAGATGCTATTTTGCAAACAAGAACTTATGACCTTTATATCACCTATGATAAATACTACCAGACACCAC
AATTATGGTTGTTCAGCTATGATGAGCAAAGGCAGCCTTTAACAGTTGAACACATGTATGAAGACATCAGTCAAGAT

Alignment

ORF - retro_mputfur_1064 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 91.21 %
• Parental protein coverage: 76.11 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MQNVINTVKGKALEVAEYLTPVLKESKFKETGVITPEEFVAAGDHLVHHCPTWQWATGEELKVKAYLPTG
          MQNVINTVKGKALEVAEYLTPV.KESKFKETGVITPEEFVA.GDHLVHH.PTWQWATGEELKVKAYLPTG
Retrocopy MQNVINTVKGKALEVAEYLTPVFKESKFKETGVITPEEFVADGDHLVHHYPTWQWATGEELKVKAYLPTG

Parental  KQFLVTKNVPCYKRCKQMEYSDELEAIIEEDDGDGGWVDTYHNTGIAGITEAVKEITLESKDSIKLQDCA
          KQ.LVTKNV.CY..CKQMEYSDELEAIIE...GDGGWVDTYHNTGIAGITEAVKEITLESKD.IK.QDCA
Retrocopy KQLLVTKNVRCYNQCKQMEYSDELEAIIEDEYGDGGWVDTYHNTGIAGITEAVKEITLESKDRIKHQDCA

Parental  AICEEEEEDDEGEAADMEEYEESGLLETDEATLDTRKIVEACKTKTDAGGEDAILQTRTYDLYITYDKYY
          AICEEEEEDDEGE.ADMEE.EESGLLETDEATL.TR...EACKTKTDAG.EDAILQTRTYDLYITYDKYY
Retrocopy AICEEEEEDDEGEPADMEEHEESGLLETDEATLNTRETGEACKTKTDAGSEDAILQTRTYDLYITYDKYY

Parental  QTPRLWLFGYDEQRQPLTVEHMYEDISQD
          QTP.LWLF.YDEQRQPLTVEHMYEDISQD
Retrocopy QTPQLWLFSYDEQRQPLTVEHMYEDISQD

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_1064 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_1064 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 13 parental genes, and 15 retrocopies.

Species	Parental gene accession	Retrocopies number
Ailuropoda melanoleuca	ENSAMEG00000018116	1 retrocopy	retro_amel_645,
Callithrix jacchus	ENSCJAG00000020358	1 retrocopy	retro_cjac_2756,
Equus caballus	ENSECAG00000011954	1 retrocopy	retro_ecab_594,
Homo sapiens	ENSG00000144848	1 retrocopy	retro_hsap_2479,
Gorilla gorilla	ENSGGOG00000006637	1 retrocopy	retro_ggor_1544,
Myotis lucifugus	ENSMLUG00000001573	1 retrocopy	retro_mluc_1025,
Macaca mulatta	ENSMMUG00000014232	1 retrocopy	retro_mmul_594,
Mustela putorius furo	ENSMPUG00000000321	2 retrocopies	retro_mputfur_1064 , retro_mputfur_1614,
Nomascus leucogenys	ENSNLEG00000004302	2 retrocopies	retro_nleu_268, retro_nleu_331,
Oryctolagus cuniculus	ENSOCUG00000015651	1 retrocopy	retro_ocun_1219,
Pongo abelii	ENSPPYG00000013548	1 retrocopy	retro_pabe_1827,
Pan troglodytes	ENSPTRG00000015220	1 retrocopy	retro_ptro_1434,
Pteropus vampyrus	ENSPVAG00000009568	1 retrocopy	retro_pvam_1399,