RetrogeneDB ID: retro_mluc_853

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429779:9818746..9820399(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000026814
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: GK
• Ensembl ID: ENSMLUG00000001046
• Aliases: None
• Description: None

Sequence

>retro_mluc_853
ATGGCAGCGTCAAAGAGAACAGATGTGGGGCTGTTGGTGGGGGCAGTGGATCAGGGCACCAGCTCGACGCGCTTCTTGGT
TTTCGACTCAAAGACAGCCGAACTACTTTGTCATCACCAGGTGGAAATAAAACAGGAGTTTCCCAAAGAAGGATGGGTGG
AGGAAAACCCTAAGGAAATTCTGCTGTCCGTCTACGAGTGCATAGACAAAGCATGTGAGAAACTCCAACGGTTCAACATT
GACCTTTCCGACGTCAAAGCGATCGGCATCACCAACCAGCGGGAAACCACTGTGGTCTGGGACAGGGTCACCGGGGAGCC
GCTCTATAACGCCGTCGTGTGGCTTGACCTCAGAACCCAGTCTACCGTTGAGAACCTCAGCAAGAGGATTCCAGTGAATA
ATAACTTTGTCAAGACCAAGACGGGCCTTCCCCTGAGCACTTACTTCAGCGCCGTGAAACTTCGTTGGCTGCTGGACAAT
GTGGAAAGCGTTCAAAAGGCTGTGGAAGAAGGGAGAGCCCTCTTTGGGACCGTTGACTCCTGGCTCATCTGGAACCTGAC
GGGAGGCGCGGAGGGAGGCGTCCACTGCACGGACGTGACAAATGCAAGCAGGACGATGCTCTTCAACATCCACTCTCTGA
AATGGGATAAAGAGCTCTGTGAATTTTTTCAAATTCCAATGAACATTCTTCCCAACGTCCGGAGCTGCTCCGAGATCTAC
GGCTTAATGAAAGCCGGGGCCTTGGAAGGGGTGCCCATCTCGGGGTGTTTGGGCGACCAGTCGGCCGCGTTGGTGGGACA
GATGTGCTTCCAGGACGGGCAAGCCAAAAACACGTACGGCACAGGCTGCTTCTTGCTGTGCAACACCGGCCGCAAGTGCG
TGTTTTCTGAGCACGGCCTGCTGACCACGGTGGGCTACAAACTCGGCAGAAACAAACCCGTGTGCTACGCCCTGGAAGGG
TCTGTCGCCATCGCGGGTGCTCTTGTTCGCTGGCTACGAGACAATCTTGGAATTATAAGCAGCTCGGAGGAAATTGAAAA
GCTTGCTAAAGAAGTGGGTACCTCTTATGGCTGCTACTTCGTCCCCGCCTTTTCCGGGTTATATGCCCCTTACTGGGATC
CCAGCGCCAGAGGGATCATCTGCGGGCTCACTCAGTTCACCAACAAGTGCCATCTTGCTTTTGCTGCCTTAGAAGCCGTT
TGCTTCCAAACCCGAGAGATTTTGGATGCCATGAACCGCGACTGTGGGATTCCACTCAGCCATCTGCAGGTGGACGGAGG
AATGACCAACAACAACGTTCTCATGCAGCTGCAGGCAGATATTCTGTGCATCCCCGTAGTGAAGCCCACCATGCCCGAAA
TAACGGCCCTGGGCGCCGCCATGGCAGCAGGGGCCGCGGAGGGAGTCGGGGTTTGGAGTCTGGACCCCGAGGATCTGACC
GCCTTCATAGAGGAAAGGTTCGAACCCCAGATCAATGCCGAGGAAAGTGAAGTCCGTTATTCTATCTGGAAGAAAGCTGT
GACGAAGTCGATGGGCTGGGTGACAACGGAGGCTTCAGAAAGCGGTGACCCTAGTATCTTCAGCAGCCTACCCTTGGGCT
TTTTTGTGGTGAGCAGCATGGTCATGTTAATCGGAGCGAGGTACATCTCAGGT

Alignment

ORF - retro_mluc_853 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 86.57 %
• Parental protein coverage: 99.64 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MAAAKKAVLGPLVGAVDQGTSSTRFLVFNSKTAELLSHHQVEIKQEFPREGWVEQDPKEILMSVYECIEK
          MAA.K....G.LVGAVDQGTSSTRFLVF.SKTAELL.HHQVEIKQEFP.EGWVE..PKEIL.SVYECI.K
Retrocopy MAASKRTDVGLLVGAVDQGTSSTRFLVFDSKTAELLCHHQVEIKQEFPKEGWVEENPKEILLSVYECIDK

Parental  TCEKLEQLNIDISNIKAIGVSNQRETTVVWDKITGEPLYNAVVWLDLRTQSTVDNLSKRIP-GNNFLKSK
          .CEKL...NID.S..KAIG..NQRETTVVWD..TGEPLYNAVVWLDLRTQSTV.NLSKRIP..NNF.K.K
Retrocopy ACEKLQRFNIDLSDVKAIGITNQRETTVVWDRVTGEPLYNAVVWLDLRTQSTVENLSKRIPVNNNFVKTK

Parental  TGLPLSTYFSAVKVRWLLDNVKEVQRAVEEDRALFGTIDSWLIWCLTGGTNGGVHCTDVTNASRTMLFNI
          TGLPLSTYFSAVK.RWLLDNV..VQ.AVEE.RALFGT.DSWLIW.LTGG..GGVHCTDVTNASRTMLFNI
Retrocopy TGLPLSTYFSAVKLRWLLDNVESVQKAVEEGRALFGTVDSWLIWNLTGGAEGGVHCTDVTNASRTMLFNI

Parental  HSLEWDKELCEFFEIPMKILPNVRSSSEIYGLMKAGALEGVPISGCLGDQSAALVGQMCFRDGQAKNTYG
          HSL.WDKELCEFF.IPM.ILPNVRS.SEIYGLMKAGALEGVPISGCLGDQSAALVGQMCF.DGQAKNTYG
Retrocopy HSLKWDKELCEFFQIPMNILPNVRSCSEIYGLMKAGALEGVPISGCLGDQSAALVGQMCFQDGQAKNTYG

Parental  TGCFLLCNTGRKCVFSEHGLLTTVAYKLGRDKPVYYALEGSVAIAGAVIRWLRDNLGIINSSDEIEKLAK
          TGCFLLCNTGRKCVFSEHGLLTTV.YKLGR.KPV.YALEGSVAIAGA..RWLRDNLGII.SS.EIEKLAK
Retrocopy TGCFLLCNTGRKCVFSEHGLLTTVGYKLGRNKPVCYALEGSVAIAGALVRWLRDNLGIISSSEEIEKLAK

Parental  EVGTSYGCYFVPAFSGLYAPYWEPSARGIICGLTQFTNKCHIAFAALEAVCFQTREILDAMNRDCGIPLS
          EVGTSYGCYFVPAFSGLYAPYW.PSARGIICGLTQFTNKCH.AFAALEAVCFQTREILDAMNRDCGIPLS
Retrocopy EVGTSYGCYFVPAFSGLYAPYWDPSARGIICGLTQFTNKCHLAFAALEAVCFQTREILDAMNRDCGIPLS

Parental  HLQVDGGMTNNKILMQLQADILYIPVVKPSMPETTALGAAMAAGAAEGVGVWSLEPEDLSAVTVERFEPQ
          HLQVDGGMTNN..LMQLQADIL.IPVVKP.MPE.TALGAAMAAGAAEGVGVWSL.PEDL.A...ERFEPQ
Retrocopy HLQVDGGMTNNNVLMQLQADILCIPVVKPTMPEITALGAAMAAGAAEGVGVWSLDPEDLTAFIEERFEPQ

Parental  INAEESEIRFSTWKKAVMKSMGWVTAESSESSDPSIFCSLPLGFFIMSSMIMFIGARYISG
          INAEESE.R.S.WKKAV.KSMGWVT.E.SES.DPSIF.SLPLGFF..SSM.M.IGARYISG
Retrocopy INAEESEVRYSIWKKAVTKSMGWVTTEASESGDPSIFSSLPLGFFVVSSMVMLIGARYISG

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_853 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 9 parental genes, and 12 retrocopies.

Species	Parental gene accession	Retrocopies number
Ailuropoda melanoleuca	ENSAMEG00000009161	1 retrocopy	retro_amel_45,
Canis familiaris	ENSCAFG00000013713	1 retrocopy	retro_cfam_19,
Cavia porcellus	ENSCPOG00000003261	2 retrocopies	retro_cpor_11, retro_cpor_20,
Equus caballus	ENSECAG00000003599	1 retrocopy	retro_ecab_9,
Felis catus	ENSFCAG00000004264	1 retrocopy	retro_fcat_140,
Myotis lucifugus	ENSMLUG00000001046	2 retrocopies	retro_mluc_151, retro_mluc_853 ,
Monodelphis domestica	ENSMODG00000002417	1 retrocopy	retro_mdom_234,
Oryctolagus cuniculus	ENSOCUG00000013023	2 retrocopies	retro_ocun_2, retro_ocun_81,
Sarcophilus harrisii	ENSSHAG00000006470	1 retrocopy	retro_shar_35,