RetrogeneDB ID: retro_mluc_784

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429775:11660232..11660822(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: C11ORF73
• Ensembl ID: ENSMLUG00000016260
• Aliases: None
• Description: None

Sequence

>retro_mluc_784
ATGTTTGGCCGCTTAGTGAAGGGAAGCTGGTGCAAACAGCTGCACAGCAAATGGCAGACGATAAATTAGTTTTTGATTTG
CCTGATTATGAAAATATTAACCATGTTGTGGTTTTTATGCTGGGAACAATCCCATTTCCTGAGGGAATGGGTGGATCTGT
CTACTTTGCCTATCCTAATTCAAATGGAATGCCAGTATGGCAACTCCTAGGATTTGTCACGAATGGGAAACCAAATGCCA
TCTTCAAAACGTCAGGTCTTAAAGCTGGAGAAGGAAGCCGGCACCCATTTGGAGCCATGAACATTGTCTGAACTTCATCT
GTTGCTCAGATTGGAATTTCAGTGGAATCATTGGACAGTCTGGCTTAGCAGACTCCTGTAGGTAATGCTGCTGTATCCTC
AGTTGACTCATTCACTCAATTCACACAAAAGATGTTGGACGACGGCTACAATTTTGCTTCATCATTTGCTATCTCTCAGG
CCCATATGACACCAAGTCCCTCTGGAACATTCATTCTAGCAAATGTGGTTCTGAAATGGTATGAGAACTTTCAAAGATGA
CTAGCATAGAACCCTCCCTTTTGGAAAACA

Alignment

ORF - retro_mluc_784 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 86.36 %
• Parental protein coverage: 100.0 %
• Number of stop codons detected: 4
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  MFGCLVAG-RLVQTAAQQVAEDKFVFDLPDYENINHVVVFMLGTIPFPEGMGGSVYFSYPDSNGMPVWQL
          MFG.LV.G..LVQTAAQQ.A.DK.VFDLPDYENINHVVVFMLGTIPFPEGMGGSVYF.YP.SNGMPVWQL
Retrocopy MFGRLVKG<KLVQTAAQQMADDKLVFDLPDYENINHVVVFMLGTIPFPEGMGGSVYFAYPNSNGMPVWQL

Parental  LGFVTNGKPSAIFKISGLKSGEGSQHPFGAMNIVRTPSVAQIGISVELLDTLAQQTPVGNAAVSSVDSFT
          LGFVTNGKP.AIFK.SGLK.GEGS.HPFGAMNIV.T.SVAQIGISVE.LD.LA.QTPVGNAAVSSVDSFT
Retrocopy LGFVTNGKPNAIFKTSGLKAGEGSRHPFGAMNIV*TSSVAQIGISVESLDSLA*QTPVGNAAVSSVDSFT

Parental  QFTQKMLDNFYNFASSFAISQAQMTPSPSEMFIPANVVLKWYENFQRRLAQNPLFWKT
          QFTQKMLD..YNFASSFAISQA.MTPSPS..FI.ANVVLKWYENFQR.LA.NP.FWKT
Retrocopy QFTQKMLDDGYNFASSFAISQAHMTPSPSGTFILANVVLKWYENFQR*LA*NPPFWKT

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_784 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 11 parental genes, and 13 retrocopies.

Species	Parental gene accession	Retrocopies number
Equus caballus	ENSECAG00000015605	1 retrocopy	retro_ecab_720,
Homo sapiens	ENSG00000149196	1 retrocopy	retro_hsap_4658,
Gorilla gorilla	ENSGGOG00000023168	1 retrocopy	retro_ggor_2891,
Myotis lucifugus	ENSMLUG00000016260	1 retrocopy	retro_mluc_784 ,
Mus musculus	ENSMUSG00000062797	1 retrocopy	retro_mmus_3722,
Nomascus leucogenys	ENSNLEG00000016224	1 retrocopy	retro_nleu_1095,
Oryctolagus cuniculus	ENSOCUG00000013108	2 retrocopies	retro_ocun_1147, retro_ocun_280,
Pongo abelii	ENSPPYG00000003746	1 retrocopy	retro_pabe_3618,
Pan troglodytes	ENSPTRG00000004144	1 retrocopy	retro_ptro_3094,
Tupaia belangeri	ENSTBEG00000009192	2 retrocopies	retro_tbel_1594, retro_tbel_3248,
Tursiops truncatus	ENSTTRG00000012267	1 retrocopy	retro_ttru_562,