RetrogeneDB ID: retro_mluc_568

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429768:25771270..25771694(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: ZMAT5
• Ensembl ID: ENSMLUG00000017398
• Aliases: None
• Description: None

Sequence

>retro_mluc_568
CAGCATCTCAAGGCCAAGAAATCCTGGTATGACATGTTCTCAGATGCAGCTGCCATCTTGCTGGATGAACAGAACAAGTG
GCCCTGCAGGAAGTTTCTACTGACAGGCCAATGTGACTTTGGCCCCAATTGCAGATTTTTCCATTGTCAGAGTGATACCT
GCAGGAGCTGAGTATCCAGGTGGGGGAGGAGGGACAGGCCAGGGAGCGTCCTCCAGACATCACTGAATTCCCTGAGGGCC
ATCTGGAGGACTGGCTGGAGAAGAGAGCCAAGTGGCTGAGCTCAGCCCCAAGCAGCAGGGCTGAACCCAACAGAGCCATG
TCTTCCAGTCCCCAGTAGACTGGACACCTGTCCAGGAGCTGGCTCCATCTCTGTGGGCACCCCCACCCAGGAGATGGCTC
CTGCAGCCCAGCATCCAATAGGGC

Alignment

ORF - retro_mluc_568 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 65.97 %
• Parental protein coverage: 83.53 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  QHLKAKKAWYDMFRAGQSPLSPEPPSQTSNCLPLAGQCDFGPNCRFSH-MSERDLQELSIQVEEERRARE
          QHLKAKK.WYDMF......L..E..........L.GQCDFGPNCRF.H..SE..LQELSIQV.EE..ARE
Retrocopy QHLKAKKSWYDMFSDAAAILLDEQNKWPCRKFLLTGQCDFGPNCRFFH<LSE*YLQELSIQVGEEGQARE

Parental  WPLDIADLPEGHLEDWLEERAKRLSSAPSSRAEPSRAT-VFQYPVGWPPVQELPPSLRAPPPGGWPLQPR
          .P.DI...PEGHLEDWLE.RAK.LSSAPSSRAEP.RA..VFQ.PV.W.PVQEL.PSL.APPP..W.LQP.
Retrocopy RPPDITEFPEGHLEDWLEKRAKWLSSAPSSRAEPNRAM<VFQSPVDWTPVQELAPSLWAPPPRRWLLQPS

Parental  VQWG
          .Q.G
Retrocopy IQ*G

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_568 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 7 parental genes, and 9 retrocopies.

Species	Parental gene accession	Retrocopies number
Ailuropoda melanoleuca	ENSAMEG00000008059	1 retrocopy	retro_amel_866,
Canis familiaris	ENSCAFG00000012343	2 retrocopies	retro_cfam_1130, retro_cfam_1424,
Cavia porcellus	ENSCPOG00000020994	1 retrocopy	retro_cpor_1043,
Echinops telfairi	ENSETEG00000003789	2 retrocopies	retro_etel_2098, retro_etel_421,
Felis catus	ENSFCAG00000004251	1 retrocopy	retro_fcat_824,
Myotis lucifugus	ENSMLUG00000017398	1 retrocopy	retro_mluc_568 ,
Mustela putorius furo	ENSMPUG00000013253	1 retrocopy	retro_mputfur_875,