RetrogeneDB ID: retro_mluc_479

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: AAPE02069435:2355..2871(-)
• Located in intron of: ENSMLUG00000026849

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: AASDHPPT
• Ensembl ID: ENSMLUG00000016238
• Aliases: None
• Description: None

Sequence

>retro_mluc_479
CCAGGTCTTGCTTCAACTTCAGAATGCCTTCTGAGTATGATAGAAAAGTTTACCAACAAAGAACGGGAAGCAATCAGAAG
CTTCAAGGATGAATGTACTCGGATGCATATGTTCTATGGGCATCAGGCGCTGAAAGAAAGCTTCATAGAAGCCATTGGTG
CTGGAATAGGGTTTGAATTGCAATTGCTTGAAAGTGATATGTCCCCACTGAACCTGGAGACTGGCCAGGTTTATAAAGAA
ACACGTTTGTGTCTGGATGGAGAAGGAGGAAAAGAATGGGCGTTTGAGGAGAGCCAAACAGATGAGCACCATCTGTGGCA
GTAGCTCCTCGGAAACCCGATGCATCTAGACATCAGGATGCTTCATCTCAGGATGATCCTACACCCCCAGAGGCAGGTCC
TGTCCTTCCCTACAGGACTTAGTATCACCTGCTGTTCCCATGAGCCCTGATTATCCTTCATTTGGGGACTGTTTTTCTTC
ACAGAAAAAGTTCTGATGGGAAATGCTACAAAATCA

Alignment

ORF - retro_mluc_479 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 64.97 %
• Parental protein coverage: 55.77 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 3

Retrocopy - Parental Gene Alignment:

Parental  PGRGSISEFFHIMKRKFTNKEWETIKSFKDEWTQLDMFYRNWALKESFIKAIGVGLGFELQRLEFDMSPL
          PG..S.SE....M..KFTNKE.E.I.SFKDE.T...MFY...ALKESFI.AIG.G.GFELQ.LE.DMSPL
Retrocopy PGLASTSECLLSMIEKFTNKEREAIRSFKDECTRMHMFYGHQALKESFIEAIGAGIGFELQLLESDMSPL

Parental  NLDLGQVYKETRLFLDGKEEKEWAFEESKIDEHHF-VAVALRKPDGSRHQDASSQDDSKPSQRQFTILTY
          NL..GQVYKETRL.LDG...KEWAFEES..DEHH..VAVA.RKPD.SRHQDASSQDD..P.......L.Y
Retrocopy NLETGQVYKETRLCLDGEGGKEWAFEESQTDEHHL<VAVAPRKPDASRHQDASSQDDPTPPEAG-PVLPY

Parental  -NDLISSAVPMTPEDPSFWDCFC-FTEEILIRNGTTS
          ..DL.S.AVPM.P..PSF.DCF..FTE..L..N.T.S
Retrocopy <QDLVSPAVPMSPDYPSFGDCFS<FTEKVLMGNATKS

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_479 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 7 parental genes, and 11 retrocopies.

Species	Parental gene accession	Retrocopies number
Bos taurus	ENSBTAG00000012279	1 retrocopy	retro_btau_134,
Echinops telfairi	ENSETEG00000004248	2 retrocopies	retro_etel_1231, retro_etel_1503,
Myotis lucifugus	ENSMLUG00000016238	4 retrocopies	retro_mluc_1361, retro_mluc_1362, retro_mluc_1363, retro_mluc_479 ,
Mus musculus	ENSMUSG00000025894	1 retrocopy	retro_mmus_2827,
Oryctolagus cuniculus	ENSOCUG00000000231	1 retrocopy	retro_ocun_379,
Ictidomys tridecemlineatus	ENSSTOG00000000268	1 retrocopy	retro_itri_1438,
Tarsius syrichta	ENSTSYG00000005102	1 retrocopy	retro_tsyr_338,