RetrogeneDB ID: retro_mluc_313

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429882:1504183..1505917(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000028492
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000012493
• Aliases: None
• Description: None

Sequence

>retro_mluc_313
ATGAAGGAGAATAAAGAAAATTCAAGCCCTTCAGTAACCTCAGCAAACCTGGACCACACAAAACCATGTTGGTACTGGGA
TAAGAAAGACTTGGCTCATACACCCTCTCAGCTAGAAGGACTTGACCCAGCCACTGAGGCCCGGTACCGCCGAGAGGGGG
CTCGGTTCATCTTTGATGTGGGCACACGTTTGGGACTACACTATGATACCCTGGCAACTGGAATAATTTATTTTCATCGC
TTCTATATGTTTCATTCCTTTAATCAATTTCCAAGATATGTAACAGGAGCTTGTTGTCTCTTTCTGGCTGGGAAAGTAGA
AGAAACACCCAAAAAATGTAAAGATATCATCAAAACAGCTCGTAGTTTATTAAATGATGTACAATTTGGCCAGTTTGGAG
ATGACCCAAAGGAAGAAGTAATGGTTCTGGAGAGAATCCTACTACAGATTATAAAGTTTGATTTACAGGTAGAACATCCA
TACCAGTTCCTACTCAAATATGCAAAGCAACTCAAAGGTGATAAAAACAAAATTCAAAAGTTGGTTCAAATGGCATGGAC
ATTTGTAAATGACAGTCTCTGCACGACCTTGTCACTTCAGTGGGAACCAGAAATCATAGCAGTGGCAGTGATGTATCTCG
CGGGACGTTTGTGCAAATTTGAAATACAAGAATGGACCTCCAAACCCATGTATCGGAGATGGTGGGAGCAGTTTGTGCAA
GATGTCCCTGTGGATGTTCTGGAAGATATCTGCCACCAAATCCTGGATCTTTACTCACAAGGAAAACAACAGATGCCTCA
TCACACGCCTCATCAGCTGCATCAGCCCCCATCGCTCAACCCCACACCACAAGTGCCACCAGTGCCACCATCACAGTCGG
CTCCAGGCCCTGAACCACCGCAGCCCCCACAGAAGGACCCGCAGCCATCAACCCAGCCGCTGCCACCACGACAGCAAGTC
AAGCAGCCCAAGAAACCGTCCCCACAGCCTAGTCCCCCCCGCCAGGTGAAGCGAGCCATGGTTGTTTCTCCCAAAGAAGA
GAACAAAGCAGCAGAATCACCACCACCTAAAATTCCCAAAATAGAGACCACTCACCCTCCATTGCCTCCGGCCCACCCAC
CACCAGACCGGAAGCCTCCCCTCGCGACTGCCTTAGGTGAGGCTGAGCCACCAGGCCCTGTGGATGCCAGTGATCTCCCC
AAAGTCCAGGTTCTTCCTCCGGTCCACCCTGTGCACCAGCCACCACCGCTGCCACACTGGCCACCGCCACCCTCCAGCTA
CATAACCGGGATGTCCACCACCAGCTTCTACATGTCTGGAGAGGGCTACCAGAGCCTGCAGTTCATGATGAAGACCCAGT
GCCCCTCCTACAGTGCCCTGCCCCCTGCCTACGGGCCTCCAGCCTACATGCCCTACCACCATGTCTACCCCCCCAACCCA
CCCCAACCACTGGTGCCCCCTCTCCCAGCCTCCTTCCCCGCACCTGCCATCCCACCCCCAACTCCCGGGTACCCTCCACC
TCCACCCACCTACCACCCAAACTTCCCGCCCCCACCCCCACGCTTGCCCCCCACCCATGCCGGTCCACCTCACCCTCCAG
GCCTGGGCCTGCCTCCAGCTAGCTACCCACTTCCATCTGTCCCCCCTGGAGGACAGCCACCTGTGCCCCCACCCATCTCC
CCACTGGGCATGCCTCCAGTCGGGGGTCTGGGGCGTGCAGCCTGGATGAGATAA

Alignment

ORF - retro_mluc_313 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 92.11 %
• Parental protein coverage: 90.54 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MKENKENSSPSVTSANLDHTKPCWYWDKKDLAHTPSQLEGLDPATEARYRREGARFIFDVGTRLGLHYDT
          MKENKENSSPSVTSANLDHTKPCWYWDKKDLAHTPSQLEGLDPATEARYRREGARFIFDVGTRLGLHYDT
Retrocopy MKENKENSSPSVTSANLDHTKPCWYWDKKDLAHTPSQLEGLDPATEARYRREGARFIFDVGTRLGLHYDT

Parental  LATGIIYFHRFYMFHSFKQFPRYVTGACCLFLAGKVEETPKKCKDIIKTARSLLNDVQFGQFGDDPKEEV
          LATGIIYFHRFYMFHSF.QFPRYVTGACCLFLAGKVEETPKKCKDIIKTARSLLNDVQFGQFGDDPKEEV
Retrocopy LATGIIYFHRFYMFHSFNQFPRYVTGACCLFLAGKVEETPKKCKDIIKTARSLLNDVQFGQFGDDPKEEV

Parental  MVLERILLQTIKFDLQVEHPYQFLLKYAKQLKGDKNKIQKLVQMAWTFVNDRTSLCTTLSLQWEPEIIAV
          MVLERILLQ.IKFDLQVEHPYQFLLKYAKQLKGDKNKIQKLVQMAWTFVND..SLCTTLSLQWEPEIIAV
Retrocopy MVLERILLQIIKFDLQVEHPYQFLLKYAKQLKGDKNKIQKLVQMAWTFVND--SLCTTLSLQWEPEIIAV

Parental  AVMYLAGRLCKFEIQEWTSKPMYRRWWEQFVQDVPVDVLEDICHQILDLYSQGKQQMPHHTPHQLHQPPS
          AVMYLAGRLCKFEIQEWTSKPMYRRWWEQFVQDVPVDVLEDICHQILDLYSQGKQQMPHHTPHQLHQPPS
Retrocopy AVMYLAGRLCKFEIQEWTSKPMYRRWWEQFVQDVPVDVLEDICHQILDLYSQGKQQMPHHTPHQLHQPPS

Parental  LNPTPQVPPVPPSQSAPGPEPPQPPQKDPQPSTQPPPPPQQVQQPKKPSPQPSPPRQVKRATVVSPKEEN
          LNPTPQVPPVPPSQSAPGPEPPQPPQKDPQPSTQP.PP.QQV.QPKKPSPQPSPPRQVKRA.VVSPKEEN
Retrocopy LNPTPQVPPVPPSQSAPGPEPPQPPQKDPQPSTQPLPPRQQVKQPKKPSPQPSPPRQVKRAMVVSPKEEN

Parental  KAAVEPPPPKIPKIETPHPPLPPAHPPPDRKPPLATALGEAEPPGPVDASELPKVQIPPPAHPAPVHQPP
          KAA.E.PPPKIPKIET.HPPLPPAHPPPDRKPPLATALGEAEPPGPVDAS.LPKVQ..PP.H..PVHQPP
Retrocopy KAA-ESPPPKIPKIETTHPPLPPAHPPPDRKPPLATALGEAEPPGPVDASDLPKVQVLPPVH--PVHQPP

Parental  PLPHRPPPPPPSSYITGMSTTSSYMSGEGYQSLQSMMKTEGPSYSALPPAYGPPAHLPYHHVYPPNPPPT
          PLPH...PPPPSSYITGMSTTS.YMSGEGYQSLQ.MMKT..PSYSALPPAYGPPA..PYHHVYPPNPP..
Retrocopy PLPHW--PPPPSSYITGMSTTSFYMSGEGYQSLQFMMKTQCPSYSALPPAYGPPAYMPYHHVYPPNPPQP

Parental  TGAPSPSLLPPTCHPTP
          ...P.P...P....P.P
Retrocopy LVPPLPASFPAPAIPPP

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_313 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 4 parental genes, and 5 retrocopies.

Species	Parental gene accession	Retrocopies number
Callithrix jacchus	ENSCJAG00000006738	1 retrocopy	retro_cjac_1273,
Myotis lucifugus	ENSMLUG00000010910	2 retrocopies	retro_mluc_1284, retro_mluc_424,
Myotis lucifugus	ENSMLUG00000012493	1 retrocopy	retro_mluc_313 ,
Myotis lucifugus	ENSMLUG00000012815	1 retrocopy	retro_mluc_1582,