RetrogeneDB ID: retro_mluc_424

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: AAPE02062765:11104..12345(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000022301
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: CCNT1
• Ensembl ID: ENSMLUG00000010910
• Aliases: None
• Description: None

Sequence

>retro_mluc_424
ATGGAGGAAGAGAGAGAGAACGACAAACAGTGGTATTTTACTTGGGAAGAGCTGGAAAATAGCCCATCTCGTTACTTTGG
GCTGGACCCAGATAAAGAACTTTCTTGTCGCCAGCAAGCGGCCAATCTGCTCCAGGACATGGGGCAACGTCTTTATGTCT
CACAATTGACTATCAACACTGCTATAGTATACATGCAGCGATTCTACATGGCCCACTCCTTCACACAGTTCCATGGATAC
ACTGTGGCTCCAGCGGCCTTATTTCTAGCAGCTAAAGTAGAGGACCAGCCCCAAAAATCGGAGCACGTCATCAAGGTAGC
ACGTGCTTGTCTCCATCCGCAGGAGTCACTTCCTGATACCAGGAGTGAGGCTTACCTGCAACAAGTTGAAGATCTGCTGA
CATTAGAAAGCTTACTTGTGCAGACTTTAGGCTCTGAACTAACAATTGATCACCCACATATACATGTGCTAAAGTGCATG
CAACTTGTTGGAGCAAGCAAGGACTTAGCACAGGCTTCTTACCTCATGGCAACCAACAGCCTGCATTTGACCACATTTAG
CCTGCAGTACACACCTCCAGTAGTGGCCTGTGTCTGCATTTATCTGGCTTGCAAGTGGTCCAACTGGGAGATCCCAGTCT
CATCTGAGGGGAAGCACTGGTGGGAGTATGTTGACGCCACTGTGACCTTGGGACTTTTAGATGAATTGACACATGAATTT
CTACGGATTCTGGAGGAAACCGTCAAGAGGCTCAAACGTTCTGGAACTGGAGGGCGTGCCGGTCTGCCTCAAAAACAAAA
GCAGCACACTGAGGAGCAGAGGCAAACCTTCGGAGCAGACAGTCCTCAATGTGATTTCCCAAAGCTCTTCAGACACAACT
ATTGCAGGTTTAAGAAGCACGCCAACCTCGTCTACCACAAGTTCAGTGCCTTCCCTTCCAACCACTGAAGAGTCATCCAG
CAACGTAAGCAGTGTGGCCATATTGCGGGGCGAGCGCTGGCTGTCCTCCCAACCTTCTTTCAAACTAGAACCTGCTCGGG
GTCATCGGACTAGTGAGAATGCAGCCCTTACAGGAGCTGATCATTCCTTGAAGCAGGATAGTCCAAATGCATTTATTTCC
CAGAAGCAGAACAAGCAAGAGTGTGCCCTCAGCTAAAGTGTCACTGAAAGAATACCGTGCAAAGCATGCAGAAGAGTTGG
CTGCCCAGAAGAGGCAACTGGAGGAGGTGGACAAAACAGTT

Alignment

ORF - retro_mluc_424 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 83.97 %
• Parental protein coverage: 57.08 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 3

Retrocopy - Parental Gene Alignment:

Parental  MEEERKNNKRWYFTREQLENSPSRRFGLDPDKELSYRQQAANLLQDMGQRLYMSSQLTINTAIVYMHRFY
          MEEER.N.K.WYFT.E.LENSPSR.FGLDPDKELS.RQQAANLLQDMGQRLY.S.QLTINTAIVYM.RFY
Retrocopy MEEERENDKQWYFTWEELENSPSRYFGLDPDKELSCRQQAANLLQDMGQRLYVS-QLTINTAIVYMQRFY

Parental  MIQSFTQFHRYTVAPAALFLAAKVEEQPKKLEHVIKVAHACLHPQESLPDTRSEAYLQQVQDLVILESII
          M..SFTQFH.YTVAPAALFLAAKVE.QP.K.EHVIKVA.ACLHPQESLPDTRSEAYLQQV.DL..LES..
Retrocopy MAHSFTQFHGYTVAPAALFLAAKVEDQPQKSEHVIKVARACLHPQESLPDTRSEAYLQQVEDLLTLESLL

Parental  LQTLGFELTIDHPHTHVVKCTQLVRASKDLAQTSYFMATNSLHLTTFSLQYTPPVVACVCIHLACKWSNW
          .QTLG.ELTIDHPH.HV.KC.QLV.ASKDLAQ.SY.MATNSLHLTTFSLQYTPPVVACVCI.LACKWSNW
Retrocopy VQTLGSELTIDHPHIHVLKCMQLVGASKDLAQASYLMATNSLHLTTFSLQYTPPVVACVCIYLACKWSNW

Parental  EIPVSTDGKHWWEYVDATVTLELLDELTHEFLQILEKTPNRLKR-IRNWRACPAATKTKAADRGAEAN-T
          EIPVS..GKHWWEYVDATVTL.LLDELTHEFL.ILE.T..RLKR...NWRAC..A.KTKAA..GAEAN..
Retrocopy EIPVSSEGKHWWEYVDATVTLGLLDELTHEFLRILEETVKRLKR<FWNWRACRSASKTKAAH*GAEAN<P

Parental  SEQTILNMISQSSSDTTIAGLMSMSTSSTTSSVPSLPTTEESSSNISSVDILQGERWLSSQPSFKLEPAQ
          SEQT.LN.ISQSSSDTTIAGL.S..TSSTTSSVPSLPTTEESSSN.SSV.IL.GERWLSSQPSFKLEPA.
Retrocopy SEQTVLNVISQSSSDTTIAGLRSTPTSSTTSSVPSLPTTEESSSNVSSVAILRGERWLSSQPSFKLEPAR

Parental  GHRTSENVALIGADHSLQQDSSNAFISQKQN-SKSVPSAKVSLKEYRAKHAEELAAQKRQLENMEANV
          GHRTSEN.AL.GADHSL.QDS.NAFISQKQN.SKSVPSAKVSLKEYRAKHAEELAAQKRQLE.....V
Retrocopy GHRTSENAALTGADHSLKQDSPNAFISQKQN>SKSVPSAKVSLKEYRAKHAEELAAQKRQLEEVDKTV

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_424 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 4 retrocopies.

Species	Parental gene accession	Retrocopies number
Myotis lucifugus	ENSMLUG00000010910	2 retrocopies	retro_mluc_1284, retro_mluc_424 ,
Myotis lucifugus	ENSMLUG00000012493	1 retrocopy	retro_mluc_313,
Myotis lucifugus	ENSMLUG00000012815	1 retrocopy	retro_mluc_1582,