RetrogeneDB ID: retro_mluc_2298

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL430185:792459..793778(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: MFAP1
• Ensembl ID: ENSMLUG00000013000
• Aliases: None
• Description: None

Sequence

>retro_mluc_2298
ATGTCGGCCCCCAGCGCACTCATGAAACAGCTGCCCATTCAGTCCACGGCCGGGGCTGTCCCGGTCCGCAATGAGAAAGG
TGAGATTTCGATGGAGAAAGTGAAGGTGAAACGTTATGTGTTGGGAAAGAGGCCAGACTATGCCCCTATGGAGTCCTCAG
ATGAGGAGGATGAAGAATTTAGTTCATTAAGAAAGCCAAAGAACAAGAAGCAGAGCCTGAGGACCAGGAGGAGGATTCAT
CTAGCGACCCCCGACTACAGCGTTTGCAGAAGAACCGTATTAGTGAAGATGTAGAAGAGAGATTGGCTCAACATCGGAAA
ATAGTGGAACCTGAAGTGGTAGGAGAAAGTGACTCAGAAGTAGAAGGAGATGCTTGGCGCATGGAACGAGAAGATAGCAG
TGAGGAAGAAGAGGAAGAAATTGATGATGAGGAAATAGAGCGGCGCCACGGCATGATGCGTCAACGAGCACAGGAGAGAA
AAAATGAAGAGATGGAAGTCATGGAAGTGGAAGATGAAGGACGTTCTGGGGAGGAGTCAGAATCAGAGTCCGAGTATGAA
GAGTACACAGACAGTGAAGATGAGATGGAGCCTCGCCTTAAGCCAGTCTTCATTCGAAAGAAGGACCGAGTAACAGTTAA
AGAACGTGAGGCTGAAGCATTGAAACAGAAGGAGCTGGAGCAGGAGGCTAAATGCATGGCTGAGGAGAGACGCAAGTATA
CACTCAAGATTGTAGAAGAGGAGACCAAAAAAGAGCTGGAGGAAAACAAGCGATCCCTGGCTGCACTGGATGCGCTGAAT
ACTGACGATGAAAATGATGAGGAGGAATATGAGGCATGGAAAGTTTGAGAACTAAAGAGAATCAAGAGGGACAGAGAAGA
TGGAGAAGCGCTTGTGAAGGAGAAAGCAGAAATTGAACGCATGCGAAACCTGACTGAGGAAGAGAGGCGAGCTGAGCTTC
GTGCAAATGGCAAAGTTATTACCAACAAAGCTGTTAAGGACAAATACAAGTTCTTACAGAAGTATTATCACCGGGGTGCC
TTCTTCATGGATGAGGATGAAGAAGTATACAAGAGAGATTTCAGCGCACCTACCCTGGAGGATCATTTCAACAAAACAAT
TCTTCCCAAAGTCATGCAGGTCAAGAATTTTGGGCGCTCTGGTCGTACCAAATATACCCACCTTGTGGACCAGGACACCA
CCTCCTTTGATTCAGCATGGGGCCAAGCGAGTGCCCAGAACACAAAGTTCTTTAAACAAAAGGCAGCTGGGGTACGAGAT
GTATTTGAACGGCCATCTGCCAAGAAGCGGAAAACTACT

Alignment

ORF - retro_mluc_2298 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 95.92 %
• Parental protein coverage: 100.0 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  MSVPSALMKQPPIQSTAGAVPVRNEKGEISMEKVKVKRYVSGKRPDYAPMESSDEEDEEFQ-FIKKAKEQ
          MS.PSALMKQ.PIQSTAGAVPVRNEKGEISMEKVKVKRYV.GKRPDYAPMESSDEEDEEF..FIKKAKEQ
Retrocopy MSAPSALMKQLPIQSTAGAVPVRNEKGEISMEKVKVKRYVLGKRPDYAPMESSDEEDEEFS<FIKKAKEQ

Parental  EAEPEEQEEDSSSDPRLRRLQ-NRISEDVEERLARHRKIVEPEVVGESDSEVE-DAWRMEREDSSEEEEE
          EAEPE.QEEDSSSDPRL.RLQ.NRISEDVEERLA.HRKIVEPEVVGESDSEVE.DAWRMEREDSSEEEEE
Retrocopy EAEPEDQEEDSSSDPRLQRLQKNRISEDVEERLAQHRKIVEPEVVGESDSEVEGDAWRMEREDSSEEEEE

Parental  EIDDEEIERRRGMMRQRAQERKNEEMEVMEVEDEGRSGEESESESEYEEYTDSEDEMEPRLKPVFIRKKD
          EIDDEEIERR.GMMRQRAQERKNEEMEVMEVEDEGRSGEESESESEYEEYTDSEDEMEPRLKPVFIRKKD
Retrocopy EIDDEEIERRHGMMRQRAQERKNEEMEVMEVEDEGRSGEESESESEYEEYTDSEDEMEPRLKPVFIRKKD

Parental  RVTVQEREAEALKQKELEQEAKRMAEERRKYTLKIVEEETKKELEENKRSLAALDALNTDDENDEEEYEA
          RVTV.EREAEALKQKELEQEAK.MAEERRKYTLKIVEEETKKELEENKRSLAALDALNTDDENDEEEYEA
Retrocopy RVTVKEREAEALKQKELEQEAKCMAEERRKYTLKIVEEETKKELEENKRSLAALDALNTDDENDEEEYEA

Parental  WKVRELKRIKRDREDREALEKEKAEIERMRNLTEEERRAELRANGKVITNKAVKGKYKFLQKYYHRGAFF
          WKV.ELKRIKRDRED.EAL.KEKAEIERMRNLTEEERRAELRANGKVITNKAVK.KYKFLQKYYHRGAFF
Retrocopy WKV*ELKRIKRDREDGEALVKEKAEIERMRNLTEEERRAELRANGKVITNKAVKDKYKFLQKYYHRGAFF

Parental  MDEDEEVYKRDFSAPTLEDHFNKTILPKVMQVKNFGRSGRTKYTHLVDQDTTSFDSAWGQESAQNTKFFK
          MDEDEEVYKRDFSAPTLEDHFNKTILPKVMQVKNFGRSGRTKYTHLVDQDTTSFDSAWGQ.SAQNTKFFK
Retrocopy MDEDEEVYKRDFSAPTLEDHFNKTILPKVMQVKNFGRSGRTKYTHLVDQDTTSFDSAWGQASAQNTKFFK

Parental  QKAAGVRDVFERPSAKKRKTT
          QKAAGVRDVFERPSAKKRKTT
Retrocopy QKAAGVRDVFERPSAKKRKTT

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_2298 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 9 parental genes, and 14 retrocopies.

Species	Parental gene accession	Retrocopies number
Dipodomys ordii	ENSDORG00000013870	1 retrocopy	retro_dord_22,
Myotis lucifugus	ENSMLUG00000013000	2 retrocopies	retro_mluc_1384, retro_mluc_2298 ,
Mus musculus	ENSMUSG00000048222	2 retrocopies	retro_mmus_1147, retro_mmus_2346,
Mus musculus	ENSMUSG00000068479	2 retrocopies	retro_mmus_2386, retro_mmus_2638,
Otolemur garnettii	ENSOGAG00000010206	1 retrocopy	retro_ogar_1784,
Rattus norvegicus	ENSRNOG00000015984	1 retrocopy	retro_rnor_83,
Sarcophilus harrisii	ENSSHAG00000014628	1 retrocopy	retro_shar_107,
Ictidomys tridecemlineatus	ENSSTOG00000006967	2 retrocopies	retro_itri_1105, retro_itri_1494,
Tupaia belangeri	ENSTBEG00000005050	2 retrocopies	retro_tbel_3001, retro_tbel_3246,