RetrogeneDB ID: retro_mluc_2248

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL430146:558902..559793(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: CCT2
• Ensembl ID: ENSMLUG00000008364
• Aliases: None
• Description: None

Sequence

>retro_mluc_2248
GCATCCCTTTCCCTGGCACTTGTCAACATCTTCCAGGCTGGCGCTGATGAAGACAGCAGAAACAGCTAATCTCTCTTCCT
TTATTGGTCCATCTCAATTGGAGTCTTGGTCTAGAGCACCTTGGGACCCAAGGGTATGGACACAATTCTGGGAAGCAGTG
AATGAGATGCCTCTCTTATGGTGGCCAGTGTTGGTGCAACTATTCTAAAAGCATTGGTGTTGATAATTCAGCATCTAAAG
TGTTAGTTGTTATGTCAAGGGTCCAGGATGATAAAGTTGGAGATGGCACTACCTCTGTTACTGTTTTAGCAGCAGAATGA
CTAAGGGAAGCAGGGTATTTCATTTCAAAAGGTTTTATCATCAGACCATTATTGTGGGTTGGAGAGAAGCCACAAAGGCA
GCAAAACAGGCTCTCTTCAATTCGGCAGTTGATCATGGTTCTAATGAAGATAAATTCTACCAAGATTTAATGAGCATGGC
AGGAACAACATTATCCTCAAAACACCTTACTCATCACAAAGATCACTTTATTAAGTTAGCTGTAGAAACTTTTCTCAGAT
TGAAGTGCTCTGGTAATCTGGAGGCAATTCATGTCATCAAGAAGTTATGAGGAAGTCTGGTGGATTCTTATTTAGATGAA
GTCTTTCTGTTGGATTAAAAAATAGGAGTAAATCAACCAAAAGGAATTGATAATTCTAAAATTATTATTAAAAATACTGG
TATGGATACAGACAAAATCAAGATATTCGGTTCCATGCAAGAGTTGATTCTATAGCAAAGGTTGCTGAAATAGATCAAGC
AGAAAACAAAAAAATAGTGAAGAAGAAAGTTGAATGTATTCTTAAGCATGGGATAAATTGCTTTATTAACAGACAATTAA
TTTATAATTGG

Alignment

ORF - retro_mluc_2248 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 75.5 %
• Parental protein coverage: 55.6 %
• Number of stop codons detected: 6
• Number of frameshifts detected: 3

Retrocopy - Parental Gene Alignment:

Parental  ASLSLAPVNIFKAGADEERAETARLSSFIGAIAIGDLVKSTLGPKGMDKILLSSGRDASLMVTNDGATIL
          ASLSLA.VNIF.AGADE.......L......I.IG.LV.STLGPKGMD.IL.SS..DASLMV...GATIL
Retrocopy ASLSLALVNIFQAGADEDSRNS*SLFLY-WSISIGVLV*STLGPKGMDTILGSSE*DASLMVASVGATIL

Parental  -KNIGVDNPAAKVLVDMSRVQDDEVGDGTTSVTVLAAELLREAESLIA-KKIHPQTIIAGWREATKAARQ
          .K.IGVDN.A.KVLV.MSRVQDD.VGDGTTSVTVLAAE.LREA...I..K....QTII.GWREATKAA.Q
Retrocopy <KSIGVDNSASKVLVVMSRVQDDKVGDGTTSVTVLAAE*LREAGYFIS<KRFYHQTIIVGWREATKAAKQ

Parental  ALLDSAVDHGSDEDKFRQDLMNIAGTTLSSKLLTHHKDHFTKLAVEAVLRLKGSGNLEAIHVIKKLGGSL
          AL..SAVDHGS.EDKF.QDLM..AGTTLSSK.LTHHKDHF.KLAVE..LRLK.SGNLEAIHVIKKL.GSL
Retrocopy ALFNSAVDHGSNEDKFYQDLMSMAGTTLSSKHLTHHKDHFIKLAVETFLRLKCSGNLEAIHVIKKL*GSL

Parental  VDSYLDEGFLLDKKIGVNQPKRIENAKILIANTGMDTDKIKIFGS-RVRVDSTAKVAEIEQAEKEK-MKE
          VDSYLDE.FLLD.KIGVNQPK.I.N.KI.I.NTGMDTDKIKIFGS...RVDS.AKVAEI.QAE..K..K.
Retrocopy VDSYLDEVFLLD*KIGVNQPKGIDNSKIIIKNTGMDTDKIKIFGS<HARVDSIAKVAEIDQAENKKIVKK

Parental  KVERILKHGINCFINRQLIYNY
          KVE.ILKHGINCFINRQLIYN.
Retrocopy KVECILKHGINCFINRQLIYNW

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_2248 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 5 parental genes, and 7 retrocopies.

Species	Parental gene accession	Retrocopies number
Canis familiaris	ENSCAFG00000000432	2 retrocopies	retro_cfam_1969, retro_cfam_2166,
Choloepus hoffmanni	ENSCHOG00000006098	1 retrocopy	retro_chof_272,
Callithrix jacchus	ENSCJAG00000001715	2 retrocopies	retro_cjac_1854, retro_cjac_2579,
Loxodonta africana	ENSLAFG00000006688	1 retrocopy	retro_lafr_351,
Myotis lucifugus	ENSMLUG00000008364	1 retrocopy	retro_mluc_2248 ,