RetrogeneDB ID: retro_mluc_1771

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429905:812141..812538(-)
• Located in intron of: ENSMLUG00000005040

Retrocopy information

• Ensembl ID: ENSMLUG00000002882
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: NDUFS8
• Ensembl ID: ENSMLUG00000017611
• Aliases: None
• Description: None

Sequence

>retro_mluc_1771
GAGCCAGCCACCATAAACTACCCCTTTGAGAAGGGCCCGCTGAGCCCACGTTTCCGTGGGGAGTATGCGCTGCGCCTATA
CCCGTCCGGGGAGGAGTGCTGCATCGCATGCAAGCTTTGCGAGGCTGTCTGCCCGGGCCCAGGCCATCACCATCAAGGCT
GAGCCGCGAGCCAATAGCAGCCGCCGGACCACTCGCTATGACATCGACATGACCAAGTGCATCTACTGTGGCTTCTGCCA
GGAGGCCTGCCCTGTGGATGCCGTTGTCGAGGGCCCCAACTTTGAGTTCTCCACGGAGACGCACGAGGAGCTGCTGTATA
ACAAGGAGAAGCTGCTGAACAATGGGGACAAGTGGGAGGCCGAGATCGCTGCCAACATCCAGGCTGACTACCTCTAC

Alignment

ORF - retro_mluc_1771 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 93.98 %
• Parental protein coverage: 62.86 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  EPATINYPFEKGPLSPRFRGEHALRRYPSGEERCIACKLCEAVCP-AQAITIEAEPRADGSRRTTRYDID
          EPATINYPFEKGPLSPRFRGE.ALR.YPSGEE.CIACKLCEAVCP.AQAITI.AEPRA..SRRTTRYDID
Retrocopy EPATINYPFEKGPLSPRFRGEYALRLYPSGEECCIACKLCEAVCP>AQAITIKAEPRANSSRRTTRYDID

Parental  MTKCIYCGFCQEACPVDAIVEGPNFEFSTETHEELLYNKEKLLNNGDKWEAEIAANIQADYLY
          MTKCIYCGFCQEACPVDA.VEGPNFEFSTETHEELLYNKEKLLNNGDKWEAEIAANIQADYLY
Retrocopy MTKCIYCGFCQEACPVDAVVEGPNFEFSTETHEELLYNKEKLLNNGDKWEAEIAANIQADYLY

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_1771 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 7 parental genes, and 13 retrocopies.

Species	Parental gene accession	Retrocopies number
Ailuropoda melanoleuca	ENSAMEG00000001217	2 retrocopies	retro_amel_366, retro_amel_613,
Canis familiaris	ENSCAFG00000011083	2 retrocopies	retro_cfam_1258, retro_cfam_129,
Callithrix jacchus	ENSCJAG00000015686	4 retrocopies	retro_cjac_1088, retro_cjac_1652, retro_cjac_2237, retro_cjac_3810,
Macropus eugenii	ENSMEUG00000015013	2 retrocopies	retro_meug_1148, retro_meug_926,
Myotis lucifugus	ENSMLUG00000017611	1 retrocopy	retro_mluc_1771 ,
Mustela putorius furo	ENSMPUG00000004193	1 retrocopy	retro_mputfur_592,
Otolemur garnettii	ENSOGAG00000013220	1 retrocopy	retro_ogar_2669,