RetrogeneDB ID: retro_mluc_1682

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429885:583723..584047(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: MED31
• Ensembl ID: ENSMLUG00000010814
• Aliases: None
• Description: None

Sequence

>retro_mluc_1682
TTTATATAGTGTTTAGCTAACCCAAATTATCTTAATTTTCTTGCCCAAAGAGGTTACTTCAAAGACAAAGCTTTTGTTAA
TTATCTTAAGTACTTGCTTTACTGGAAAGAACCAGAATATGCCAAGTATCTAAAGTACCCTCAGTGTTTACACATGTTAG
AACTGCTCCAGTACGAACACTTCCGCAAGGAGCTGGTGAATGCTCAGCGTGCGAAATTTATTGATGAGCAGCAAATTCTG
CACTGGCAGCACTGTTCCCGGAAGCGGATGCGCCTTCAGCAAGCCCTGGCAGAGCAGCAACAGCAAAATAACACCTCAGG
AAAA

Alignment

ORF - retro_mluc_1682 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 96.3 %
• Parental protein coverage: 82.44 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  FVQCLANPNYLNFLAQRGYFKDKAFVNYLKYLLYWKEPEYAKYLKYPQCLHMLELLQYEHFRKELVNAQC
          F..CLANPNYLNFLAQRGYFKDKAFVNYLKYLLYWKEPEYAKYLKYPQCLHMLELLQYEHFRKELVNAQ.
Retrocopy FI*CLANPNYLNFLAQRGYFKDKAFVNYLKYLLYWKEPEYAKYLKYPQCLHMLELLQYEHFRKELVNAQR

Parental  AKFIDEQQILHWQHYSRKRMRLQQALAEQQQQNNTSGK
          AKFIDEQQILHWQH.SRKRMRLQQALAEQQQQNNTSGK
Retrocopy AKFIDEQQILHWQHCSRKRMRLQQALAEQQQQNNTSGK

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_1682 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 4 retrocopies.

Species	Parental gene accession	Retrocopies number
Canis familiaris	ENSCAFG00000023445	1 retrocopy	retro_cfam_863,
Myotis lucifugus	ENSMLUG00000010814	1 retrocopy	retro_mluc_1682 ,
Mus musculus	ENSMUSG00000020801	2 retrocopies	retro_mmus_1479, retro_mmus_3201,