RetrogeneDB ID: retro_mluc_1589

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429867:725579..725952(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: GMNN
• Ensembl ID: ENSMLUG00000014849
• Aliases: None
• Description: None

Sequence

>retro_mluc_1589
ATGAGTCCCGGTATGAAGCAGAAACAAAAAGGGACCCAAAGACATGTGGATAGTCCTGTCCCAAGAAGAACTCTGAAGAG
GATCCAGCCTCCCACAGCCGGGTCTCTTGTGGGAAGAGAAAATGAGTTGGTTGAGGGCTTGTCCAAAGGAGACATGGGAA
TGACCCGTTCACAGCTCAGACTTCCAGCTCTGGCGTTATTATCGTCCCAGAACATAGTGAAAACAAAGATCTTGGAGGAG
TTGCCCAAGAATCATTTGGTCTTATGGTTACAGAAAATCCATCCTCTCCATCTTGGAAAGAAGTGGAGAGAAACGGAGGG
AGGCGGTCTGTGAAGCACTAAAGGAAAAGGCGAAACTTCATAACAAAATTGAA

Alignment

ORF - retro_mluc_1589 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 62.5 %
• Parental protein coverage: 61.46 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  MNPNMKQKQEGTHGRVQSSPVPRRTLKMIQPSTAGPLVGRENELVKGSFKP-KHRSDQSASKTSGSGVPA
          M.P.MKQKQ.GT...V.S.PVPRRTLK.IQP.TAG.LVGRENELV.G..K...H..D.....TS.SGV..
Retrocopy MSPGMKQKQKGTQRHVDS-PVPRRTLKRIQPPTAGSLVGRENELVEGLSKG<RHGNDPFTAQTSSSGVII

Parental  VPEHGESKELGGVTQEALDLMAAENPSSQYWKEV-AEQRRKALYEALKENEKLHRDIE
          VPEH.E.K.LGGV.QE...LM..ENPSS..WKEV..E.RR.A..EALKE..KLH..IE
Retrocopy VPEHSENKDLGGVAQESFGLMVTENPSSPSWKEV<GEKRREAVCEALKEKAKLHNKIE

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_1589 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 11 parental genes, and 15 retrocopies.

Species	Parental gene accession	Retrocopies number
Callithrix jacchus	ENSCJAG00000006161	1 retrocopy	retro_cjac_1012,
Microcebus murinus	ENSMICG00000014010	1 retrocopy	retro_mmur_594,
Myotis lucifugus	ENSMLUG00000014849	2 retrocopies	retro_mluc_1589 , retro_mluc_743,
Monodelphis domestica	ENSMODG00000011682	1 retrocopy	retro_mdom_1800,
Mus musculus	ENSMUSG00000006715	2 retrocopies	retro_mmus_1525, retro_mmus_2213,
Oryctolagus cuniculus	ENSOCUG00000000728	1 retrocopy	retro_ocun_613,
Otolemur garnettii	ENSOGAG00000004982	1 retrocopy	retro_ogar_1726,
Ochotona princeps	ENSOPRG00000007969	1 retrocopy	retro_opri_439,
Rattus norvegicus	ENSRNOG00000018782	1 retrocopy	retro_rnor_820,
Sarcophilus harrisii	ENSSHAG00000004058	2 retrocopies	retro_shar_581, retro_shar_769,
Tupaia belangeri	ENSTBEG00000010502	2 retrocopies	retro_tbel_1028, retro_tbel_353,