RetrogeneDB ID: retro_mluc_1095

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429794:1383680..1383957(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000024611
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: PPP1R14C
• Ensembl ID: ENSMLUG00000023245
• Aliases: None
• Description: None

Sequence

>retro_mluc_1095
CAAGAGAAGGTCACGGTCAAGTATGACCGCAAGGAGTTACAGAAGCGCCTGAACCTGGAGGAATGGATCCTAAAACAGTT
CACTCGCCTCTATGACTGCCAGAAAGAGGAGATCCCAGAGCTGGAGATTGACAAACTCCTGGACATGGAGAGTGATGATA
CCCGGGCTGCCAGGGTCAAGGAGCTGCTGGTTGACTGTTACCAAACCCACTGAGGCCTTCATCTCTGGCCTGCTGGACAA
GATCTGGGGCATGCAGAAGCTGAGCACACCCCAGAAG

Alignment

ORF - retro_mluc_1095 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 62.11 %
• Parental protein coverage: 54.97 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  QGKVTVKYDRKELRKRLVLEEWIVEQLGRLYGCEEEEMPDVEIDIDDLLDADSEEERALKLREALVDCH-
          Q.KVTVKYDRKEL.KRL.LEEWI..Q..RLY.C..EE.P..E..ID.LLD..S...RA....E.LVDC..
Retrocopy QEKVTVKYDRKELQKRLNLEEWILKQFTRLYDCQKEEIP--ELEIDKLLDMESDDTRAARVKELLVDCY>

Parental  KPTEEFIKELLSRIRGMRKLSPPQK
          KPTE.FI..LL..I.GM.KLS.PQK
Retrocopy KPTEAFISGLLDKIWGMQKLSTPQK

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_1095 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 7 parental genes, and 16 retrocopies.

Species	Parental gene accession	Retrocopies number
Bos taurus	ENSBTAG00000026586	2 retrocopies	retro_btau_161, retro_btau_571,
Dasypus novemcinctus	ENSDNOG00000017261	2 retrocopies	retro_dnov_1661, retro_dnov_80,
Myotis lucifugus	ENSMLUG00000022952	3 retrocopies	retro_mluc_466, retro_mluc_602, retro_mluc_742,
Myotis lucifugus	ENSMLUG00000023245	2 retrocopies	retro_mluc_1095 , retro_mluc_499,
Mus musculus	ENSMUSG00000040653	2 retrocopies	retro_mmus_2089, retro_mmus_3721,
Pongo abelii	ENSPPYG00000017102	4 retrocopies	retro_pabe_1880, retro_pabe_2079, retro_pabe_3001, retro_pabe_3232,
Tarsius syrichta	ENSTSYG00000002873	1 retrocopy	retro_tsyr_245,