RetrogeneDB ID: retro_mgal_7

Retrocopy location

• Organism: Turkey (Meleagris gallopavo)
• Coordinates: 1:131113099..131113705(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMGAG00000014703
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: RAB7A
• Ensembl ID: ENSMGAG00000007208
• Aliases: None
• Description: None

Sequence

>retro_mgal_7
ATGGCAGCAAAATCATCACTCCTTAAAGTAATACTGCTAGGAGATGGTGGTGTTGGGAAGAGTTCCCTTATGAATAGATA
CGTCACCAACAAGTTTGATGCACAGCTTTTTCATACGATAGGTGTGGAATTCTTAAACAAAGATTTGGAAGTGGATGGAC
ACTTTGTCACTCTGCAGATCTGGGACACAGCAGGTCAGGAACGTTTTAGGAGCCTGCGGACTCCTTTCTACAGAGGTTCT
GACTGTTGCCTGCTTACCTTCAGCGTGGATGACTCTCAAAGCTTCCAAAACTTAAGCAACTGGAAGAAAGAGTTCATTTA
TTATGCAGATGTCAAGGAGCCCGAAAGCTTTCCATTTGTGATATTGGGTAACAAAGTTGATATAAATGAGAGGCAGGTGT
CTACGGAAGAAGCCCAAGACTGGTGCAGGAATAATGGCAACCATCCCTATTTTGAAACCAGTGCAAAAGATGCCACTAAT
GTTGCAGCAGCCTTTGAAGAAGCTGTTAGAAGAGTTCTAGCCTCTGAAGATAGATCGGATCATTTTATTCAAACGGATAC
AGTAAACCTTCATCGGAAACCGAAACCTAGTTCATCTTGTTGTTGA

Alignment

ORF - retro_mgal_7 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 56.07 %
• Parental protein coverage: 83.57 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  KKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLG
          K..LLKVI.LGD.GVGK.SLMN.YV..KF..Q...TIG..FL.K...VD...VT.QIWDTAGQERF.SL.
Retrocopy KSSLLKVILLGDGGVGKSSLMNRYVTNKFDAQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLR

Parental  VAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVTTKRAQAWCY
          ..FYRG.DCC.L.F.V.....F..L..W..EF...A....PE.FPFV.LGNK.D...RQV.T..AQ.WC.
Retrocopy TPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKVDINERQVSTEEAQDWCR

Parental  SKNNIPYFETSAKEAINVEQAFQTIARNALKQE
          ...N.PYFETSAK.A.NV..AF....R..L..E
Retrocopy NNGNHPYFETSAKDATNVAAAFEEAVRRVLASE

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Meleagris gallopavo was not studied using RNA-Seq expression data.

ChIP-Seq

Meleagris gallopavo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mgal_7 retrocopy.

TSS

Meleagris gallopavo was not studied using FANTOM5 data.

Lab

retro_mgal_7 was not experimentally validated.

Homology

Retrocopy orthology:

Retrocopy retro_mgal_7 has 0 orthologous retrocopies within neognath group .

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Parental genes homology:

Parental genes homology involve 10 parental genes, and 12 retrocopies.

Species	Parental gene accession	Retrocopies number
Choloepus hoffmanni	ENSCHOG00000000365	1 retrocopy	retro_chof_13,
Felis catus	ENSFCAG00000022971	2 retrocopies	retro_fcat_661, retro_fcat_76,
Meleagris gallopavo	ENSMGAG00000007208	1 retrocopy	retro_mgal_7 ,
Myotis lucifugus	ENSMLUG00000008454	1 retrocopy	retro_mluc_1641,
Mustela putorius furo	ENSMPUG00000017333	1 retrocopy	retro_mputfur_1169,
Mus musculus	ENSMUSG00000079477	2 retrocopies	retro_mmus_3339, retro_mmus_3546,
Oryctolagus cuniculus	ENSOCUG00000001645	1 retrocopy	retro_ocun_259,
Pongo abelii	ENSPPYG00000013431	1 retrocopy	retro_pabe_90,
Rattus norvegicus	ENSRNOG00000012247	1 retrocopy	retro_rnor_2779,
Sarcophilus harrisii	ENSSHAG00000016787	1 retrocopy	retro_shar_65,