RetrogeneDB ID: retro_meug_741

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: Scaffold17220:27021..27809(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: AURKC
• Ensembl ID: ENSMEUG00000014431
• Aliases: None
• Description: aurora kinase C [Source:HGNC Symbol;Acc:11391]

Sequence

>retro_meug_741
CAGTGGGCTTTGGATGACTTTGAAATTGTTAGCCCTTTGGGAAAAGGAAAGTTTGAAAGTGTCTACTTGGCACAAGAGAA
ACAAAGCAATTTATCGTGGCACTTAAAGTAATTTTTTAAGTCCCATTTGGAACAAGCAGGAGTTGAACATCAGCTGAGTG
GAAAAGTAGAAATACAATCTCATCTTAGGCATCCTAATATTCTGAGATTATATGGTTATTTTCATGATGTCACAAGAGTT
TACCTAATTCTAGAATAAGCTCCTCATGGAGAAGTCTATAGAGAGCTTCAAAAGTTTTCAAAGTTGGATGAACAAAGAAC
AACTACTTATATCACAGAACTGGCAGATGCCTTATCATACTGCCACTCAAAAAAGGTGATTCATGGAGATATTAAGCCAG
AGAACTTACTACTTGGATCAGATGGAGAGCTGAAGATTGCAGATTTTGACTGATCAGTTCATGCCTCATCTACTAGGATG
ACAACTCGTTGTCACACACTTGACTATTTGCCTCCTGAGATCATTGAAGGCAAGATGCATGATGAAAAAGTGGATCTTTG
GAGTCTTGGAGTTCTGTGCTATGAATTTCTAGTTGGAAAACCTCCTTTTGAGGGAGAAACTTCGCAAGAAACTTTAGAAG
CATTTCAAAGGTTGAATATAAATTCCCTGACTTTGTAACAGAAGGGGCTAGAGATCTCATTTCAAGGATTTTGAAATATA
ATCCTTACCAAAGGCTGACATTGAAGGAGCTCCTTGAACATCCTTGGACCATAGTAAATTCTTCAAAA

Alignment

ORF - retro_meug_741 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 65.79 %
• Parental protein coverage: 80.43 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 3

Retrocopy - Parental Gene Alignment:

Parental  QFKIDDFEIGRPLGKGKFGNVYLAREKNS-QFIVALKVLF-KSQMEKEGVEHQLRREIEIQSHLRHPNIL
          Q...DDFEI..PLGKGKF..VYLA.EK.S.QFIVALKV.F.KS..E..GVEHQL....EIQSHLRHPNIL
Retrocopy QWALDDFEIVSPLGKGKFESVYLAQEKQS<QFIVALKVIF>KSHLEQAGVEHQLSGKVEIQSHLRHPNIL

Parental  RLYNYFHDRSRVYLVLEYAPRGELYKELQKSHTFDQQRTATIMEELADALIYCHGKKVIHRDIKPENLLM
          RLY.YFHD..RVYL.LE.AP.GE.Y.ELQK....D.QRT.T...ELADAL.YCH.KKVIH.DIKPENLL.
Retrocopy RLYGYFHDVTRVYLILE*APHGEVYRELQKFSKLDEQRTTTYITELADALSYCHSKKVIHGDIKPENLLL

Parental  GLRGELKIADFGWSVHAPSLRRKTMCGTLDYLPPEMIEGRTHDEKVDLWCIGVLCYELLVGNPPFESSSH
          G..GELKIADF..SVHA.S.R..T.C.TLDYLPPE.IEG..HDEKVDLW..GVLCYE.LVG.PPFE....
Retrocopy GSDGELKIADFD*SVHASSTRMTTRCHTLDYLPPEIIEGKMHDEKVDLWSLGVLCYEFLVGKPPFEGETS

Parental  SET-YRRITKVDLKFPPSMPSGAQDLISKLLRHNPSERLSLSKVLEHPWVQAHSRR
          .ET..R.I.KV..KFP.....GA.DLIS..L..NP..RL.L...LEHPW....S..
Retrocopy QET<FRSISKVEYKFPDFVTEGARDLISRILKYNPYQRLTLKELLEHPWTIVNSSK

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_741 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_741 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 5 parental genes, and 11 retrocopies.

Species	Parental gene accession	Retrocopies number
Canis familiaris	ENSCAFG00000023297	1 retrocopy	retro_cfam_1177,
Echinops telfairi	ENSETEG00000015413	1 retrocopy	retro_etel_1828,
Macropus eugenii	ENSMEUG00000014431	2 retrocopies	retro_meug_741 , retro_meug_947,
Mus musculus	ENSMUSG00000070837	1 retrocopy	retro_mmus_2455,
Otolemur garnettii	ENSOGAG00000000999	6 retrocopies	retro_ogar_1122, retro_ogar_1159, retro_ogar_1240, retro_ogar_1293, retro_ogar_2384, retro_ogar_923,