RetrogeneDB ID: retro_meug_74

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: GeneScaffold_1464:15420..16452(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMEUG00000006532
• Aliases: None
• Description: None

Sequence

>retro_meug_74
CTCGCGGACCTGGTGACTCCGCTGTGGCGGCTGGACTACGAGCAGCAGCTTCGGGTGAAGGCGGAGACTCTGCGCGGCCT
CCTGGAGCGCCTCGAGGCTCGCCTGCGTTCGCTTGGGAGCCCGGACGCCGAGGCCGGGAGCCTTTGCTCGCGTCTGCAGC
CCTTCCGGCCGTCCCCGGTCATCGACGGCTACCGAAACAAGTGCAACTTCGCCATCCGCCAGGGCCCCGACGGCCGGCCC
CGGACCGTGGGCTACGTGCTGGGCTCTCGGCGGGAGCAGCAGCTGGTGTGCGTGCAGCCCGGGCACCTGAAGCACATCCC
CGACAAGCACCAACGCGTGGCCCGCTGCTACCAGGCCTTCCTGGAGCAGAGCCCGCTCGAGCCCTACCTGGAGCCACACG
GCAGCGGACACTGGCACGAGCTCACGGTCCGGAGCACCGGCCGCGGCCACACCATGGCGATCATCGCCTTCCATCCGCAG
CAGCTGCGGCCCGACCAGCTCCGGCCTCACCAGGAGCAGGTCAAGGAGTTTTTCACCCACGGCCCCGGGGCCGCTTGTGA
CTTGACCTCCCTTTACTTCCAGGAGAATGTCCAGGGCGGCCAGCAGCCGCCCCGCTACCAGCTCCTGGCTGGAGAGCCTC
ACATTTTCGAAGACCTCCCGGGCCTGAAATTCCGAATCTCTCCCGGTGCTTTTTTCCAGATTAATTCGGCTGCTGTCGAG
GTTCTCTACAGGGTGGTGGGAGAGCTGAGCGGGGTGGACCCCAATACTCTTCTCCTTGACCTTAGCCAAGGAACTGGGGC
CACCAGCCTCTCCCTGGCCCAGCGCACAGCTCAGGTCCTGAGCACGGGGTTGGTGGGGCAGGCGGTAGAGGATGCCAGAT
GGACCGCAGCATTTAATGGAATCACCAACTGGGAATTCCATGCTGACCAGGTCGAGAATATAGTGCCGCAGCTTTTAAAA
TCACAGGAGACTGGTCAGTCGCTTGTGGCCATGGTGGACCCTTCCCGGACTGGACTGAACAGCCAGGTGGTC

Alignment

ORF - retro_meug_74 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 57.83 %
• Parental protein coverage: 83.21 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  LADQMLPLWRLNYEEQLKVKFESLKKNLETLEIRLRKIGAGDPEPTTARSERLCSLLHPFIPSPIIDGYR
          LAD...PLWRL.YE.QL.VK.E.L...LE.LE.RLR....G.P....A....LCS.L.PF.PSP.IDGYR
Retrocopy LADLVTPLWRLDYEQQLRVKAETLRGLLERLEARLRSL--GSPD---AEAGSLCSRLQPFRPSPVIDGYR

Parental  NKSSFSINQGPDGN-KTVGYYLKSW--SNIFCVQPSHLKDIXXXXXXXXXCFEAFLQQSRLG-HFDSCKV
          NK..F.I.QGPDG...TVGY.L.S.......CVQP.HLK.I.........C..AFL.QS.L.........
Retrocopy NKCNFAIRQGPDGRPRTVGYVLGSRREQQLVCVQPGHLKHIPDKHQRVARCYQAFLEQSPLEPYLEPHGS

Parental  GPWHELIVRTTFLGHTMAIIIFNPQELSQEELCVQKEEIKEFFSTGPGAVCDLTSLYVKESTRTPRHQQL
          G.WHEL.VR.T..GHTMAII.F.PQ.L....L....E..KEFF..GPGA.CDLTSLY..E.......QQ.
Retrocopy GHWHELTVRSTGRGHTMAIIAFHPQQLRPDQLRPHQEQVKEFFTHGPGAACDLTSLYFQENVQGG--QQP

Parental  TPFQLLAGEPYLFEEILGLKVRISPGAFFQLNTSAAEVLYRTVGELGGVDPNTVIFDFSHGTGATALSLA
          ...QLLAGEP..FE...GLK.RISPGAFFQ.N..A.EVLYR.VGEL.GVDPNT...D.S.GTGAT.LSLA
Retrocopy PRYQLLAGEPHIFEDLPGLKFRISPGAFFQINSAAVEVLYRVVGELSGVDPNTLLLDLSQGTGATSLSLA

Parental  RQTSQIFSMGLVGQALEDAKWTAAFNGITNWESHTGNVKEILSQLLESQEDGRSLMALVDPSQCGLSNRV
          ..T.Q..S.GLVGQA.EDA.WTAAFNGITNWE.H...V..I..QLL.SQE.G.SL.A.VDPS..GL...V
Retrocopy QRTAQVLSTGLVGQAVEDARWTAAFNGITNWEFHADQVENIVPQLLKSQETGQSLVAMVDPSRTGLNSQV

Parental  V
          V
Retrocopy V

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_74 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_74 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 9 parental genes, and 10 retrocopies.

Species	Parental gene accession	Retrocopies number
Callithrix jacchus	ENSCJAG00000004570	1 retrocopy	retro_cjac_1676,
Homo sapiens	ENSG00000188917	1 retrocopy	retro_hsap_272,
Gorilla gorilla	ENSGGOG00000023759	1 retrocopy	retro_ggor_319,
Macropus eugenii	ENSMEUG00000006532	2 retrocopies	retro_meug_1325, retro_meug_74 ,
Macaca mulatta	ENSMMUG00000010394	1 retrocopy	retro_mmul_567,
Monodelphis domestica	ENSMODG00000025630	1 retrocopy	retro_mdom_77,
Nomascus leucogenys	ENSNLEG00000007522	1 retrocopy	retro_nleu_1485,
Pongo abelii	ENSPPYG00000020545	1 retrocopy	retro_pabe_397,
Pan troglodytes	ENSPTRG00000023413	1 retrocopy	retro_ptro_228,