Parental gene:

TRMT2B, ENSPPYG00000020545

Aliases:TRMT2B, CXorf34
Description:tRNA (uracil(54)-C(5))-methyltransferase homolog [Source:RefSeq peptide;Acc:NP_001124606]
Organism:Orangutan (Pongo abelii)
Coordinates:X:99998491..100034481(-)


>ENSPPYG00000020545
ATGGCAGGCCTTAAGAGAAGAGTCCCACTGCACAGCCTCAGATTCATCTCCATGGCGGGTCTCTTCTTCAAACCAGGACT
GCTTCCCTGGTATGCCAGAAATCCACCAGGATGGTCACAGCTCTTTCTGGGCACAGTATGTAAGGGAGATTTCACCCGTG
TGATAGCCACGAAGTGTCAGAAAGGACAAAAAAGTCAGAAGAAACCAAGCCATCTTGGACCACTAGATGGTTCCTGGCAG
GAAAGGCTGGCTGATGTTGTGACACCACTCTGGAGGTTGAGCTATGAAGAACAGCTCAAGGTGAAATTTGCAGCTCAGAA
GAAAATTTTACAAAGACTAGAGTCTTATATCCAAATGCTCAATGGAGTCAGTGTGACAACGGCTGTACCCAAATCTGAGA
GGCTCTCTTGTCTTCTCCATCCTATTATACCCTCTCCTGTCATCAATGGTTACCGAAATAAGTCCACCTTCTCTGTGAAC
CGAGGTCCAGATGGCAATCCAAAGACTGTGGGGTTCTACCTGGGAACTTGGAGAGATGGGAACATGGTCTGCGTGCAGTC
TAATCATCTGAAAAACATCCCTGAGAAGCACAGTCAAGTGGCACAGTACTATGAAGTATTCCTTCGACAGTCTCCATTGG
AGCCCTGCCTTGTATTTCATGAAGGTGGATACTGGCGTGAGCTCACAGTCCGCACCAATAGCCAAGGGCACACAATGGCT
ATCATCACTTTCCATCCCCAGAATTTAAGTCAGGAGGAGCTCCATGTTCAGAAGGAGATTGTAAAGGAATTTTTCATCAG
AGGTCCTGGAGCAGCCTGTGACTTGACCTCACTTTACTTCCAGGAAAGTACCATGACCCGTTGCAGCCATCAGCAGTCTC
CCTATCAGCTTCTGTTTGGGGAACCCTACATCTTTGAAGAACTTCTGAGCTTGAAGATCCGCATCTCTCCAGATGCCTTT
TTCCAGATTAACACTGCTGGTGCAGAGATGCTGTATCGGACTGTGGGGGAGCTGACTGGAGTGAACTCTGACACCATCCT
TCTTGACATCTGCTGTGGAACTGGTGTGATTGGCCTCTCTCTGTCTCAGCATACATCTCGGGTCCTTGGGATTGAATTGG
TGGAGCAGGCAGTGGAGGATGCAAGATGGACTGCAGCCTTCAATGGCATCACCAACTCTGAATTTCATACTGGTCGAGCA
GAGAAGATTTTGCCAGGGCTGCTAAAGTCAAAGGAAGATGGACAGTCAATTGTTGCTGTGGTGAACCCAGCCCGTGCCGG
ACTGCATTACAAGGTGATTCAAGCCATTCGAAACTTCAGGGCCATCCACACGCTAGTTTTTGTTTCCTGCAAGCTCCATG
GTGAATCCACTAGGAATGTCATTGAGCTGTGCTGTCCTCCAGACCCTGCTAAGAAGCTCTTAGGCGAGCCCTTTGTCCTG
CAGCAAGTTGTACCTGTGGATTTGTTCCCTCACACCCCACATTGTGAGCTGGTGCTCCTCTTTACTCGATAA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 9 .01 RPM
SRP007412_cerebellum 5 .72 RPM
SRP007412_heart 10 .96 RPM
SRP007412_kidney 18 .99 RPM
SRP007412_liver 10 .86 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000004570 ortholog_one2one 1 retrogene
retro_cjac_1676,
Homo sapiens ENSG00000188917 ortholog_one2one 1 retrogene
retro_hsap_272,
Gorilla gorilla ENSGGOG00000023759 ortholog_one2one 1 retrogene
retro_ggor_319,
Macropus eugenii ENSMEUG00000006532 ortholog_one2many 2 retrogenes
retro_meug_1325, retro_meug_74,
Macaca mulatta ENSMMUG00000010394 ortholog_one2one 1 retrogene
retro_mmul_567,
Monodelphis domestica ENSMODG00000025630 ortholog_one2many 1 retrogene
retro_mdom_77,
Nomascus leucogenys ENSNLEG00000007522 ortholog_one2one 1 retrogene
retro_nleu_1485,
Pan troglodytes ENSPTRG00000023413 ortholog_one2one 1 retrogene
retro_ptro_228,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_397 74.58 70.58
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Download FASTA sequences of all ENSPPYG00000020545 retrocopies