RetrogeneDB ID: retro_meug_1061

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: Scaffold273782:740..1310(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMEUG00000015244
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMEUG00000001068
• Aliases: None
• Description: None

Sequence

>retro_meug_1061
GGGCATGGTGACAGTGTGGATCTACTTTGTTGGCATCAGAGCAATCCAGACCTCTTTGTCATTGCATCTGGGGGACAGAA
CTATTTGAATCTCAGATGTTAGAACTACAAAATGCATCACCACTGTGAATATAAAAGAGGACAATATTAACATTTTCTGG
AGTCGTGATGGGCAAACCATTGGTGTGGGCAGCAAAGATGATGTGGTAATTTTCATTGATGCTAAAACTCACCCTTCAAA
AGCAGAGGAGCAGTTTACATTTGAAGTCTCTGAAATCTCCTGGAATATTATTAACGATTTGTTCTTCCTGACTAATGGCA
CAGGTTGTATCAACATTCTAAGATATCCTCAGATGAAATCTGTTCAGTCCTTTAATGCCTATCTTTCTAATTGCATCAGT
ATCAAACTTGAAGGCACAGGGAAGCAATTTGCTACAGGAAATGCTGATGTTCTGGTTAGTCTTTGGGGTGTTGAGGAGCA
GTTGTGTGTGAGATGTTTGTCCAGATTGATTTAGCTAATGAGACCCTCAGTTTTAGACATGATAGAAGGATGTTTGTGTT
AGCATCTGAC

Alignment

ORF - retro_meug_1061 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 71.35 %
• Parental protein coverage: 54.29 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  GHGDSVDQLCWHPSNPDLFVTASG-DKTIRIWDVRTTKCIATVNTKGENINICWSPDGQTIAVGNKDDVV
          GHGDSVD.LCWH.SNPDLFV.ASG.D.TI.I.DVRTTKCI.TVN.K..NINI.WS.DGQTI.VG.KDDVV
Retrocopy GHGDSVDLLCWHQSNPDLFVIASG>DRTI*ISDVRTTKCITTVNIKEDNINIFWSRDGQTIGVGSKDDVV

Parental  TFIDAKTHRSKAEEQFRFEVNEISWNNDNNMFFLTNGNGCINILSYPELKPVQSINAHPSNCICIKFDPT
          .FIDAKTH.SKAEEQF.FEV.EISWN..N..FFLTNG.GCINIL.YP..K.VQS.NA..SNCI.IK...T
Retrocopy IFIDAKTHPSKAEEQFTFEVSEISWNIINDLFFLTNGTGCINILRYPQMKSVQSFNAYLSNCISIKLEGT

Parental  GKYFATGSADALVSLWDVDELVCVRCFSRL-DWPVRTLSFSHDGKMLASASE
          GK.FATG.AD.LVSLW.V.E..CVRC.SRL.D....TLSF.HD..M...AS.
Retrocopy GKQFATGNADVLVSLWGVEEQLCVRCLSRL<DLANETLSFRHDRRMFVLASD

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_1061 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_1061 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 6 parental genes, and 9 retrocopies.

Species	Parental gene accession	Retrocopies number
Callithrix jacchus	ENSCJAG00000006495	2 retrocopies	retro_cjac_1571, retro_cjac_3072,
Macropus eugenii	ENSMEUG00000001068	2 retrocopies	retro_meug_1061 , retro_meug_19,
Monodelphis domestica	ENSMODG00000005339	1 retrocopy	retro_mdom_164,
Mus musculus	ENSMUSG00000025872	2 retrocopies	retro_mmus_1821, retro_mmus_441,
Otolemur garnettii	ENSOGAG00000003503	1 retrocopy	retro_ogar_3005,
Sarcophilus harrisii	ENSSHAG00000010757	1 retrocopy	retro_shar_4,